Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5063 136 4e-27 seq2066 113 5e-20 seq4834 104 3e-17 >seq5063 Length=4177 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| ||||||||||| |||||||| | || ||| Sbjct 2229 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 2288 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| |||||||| ||||||||||| || || | || | | || |||||| | Sbjct 2289 AGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 2348 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || | | ||||||| | ||| || || | ||||| || ||| Sbjct 2349 ATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTG 2408 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || || || ||||||||||||||| Sbjct 2409 CCGGTGAGAGTCTTCACAAAGATTTGCATT 2438 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || ||||| | || ||||| ||||| |||||||| Sbjct 2623 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAG 2682 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||| || || | || | | ||||||||| |||||| ||||| || Sbjct 2683 ATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 2742 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | ||| || || | ||||| || ||||| ||||| || || || Sbjct 2743 TCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTCACG 2802 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 2803 AAGATTTGCAT 2813 Score = 109 bits (120), Expect = 6e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||||||| |||| |||||||||||||| || || Sbjct 1703 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCGTCTTCGAGCTGCTTGCCAGCAAA 1762 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 |||| ||||||||| |||| || | | |||||||||| ||||| Sbjct 1763 GATCAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTCCTGAATCTT 1810 Score = 104 bits (114), Expect = 3e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| || ||||||||| |||| ||||||||||| ||||| || Sbjct 1933 CTCCTTCTGGATATTGTAGTCCGAGAGAGTGCGCCCGTCTTCGAGCTGCTTTCCGGCAAA 1992 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || | ||||||||| |||| || | | |||||||||| Sbjct 1993 GATGAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTCC 2032 >seq2066 Length=2850 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| ||||||||||| |||||||| Sbjct 879 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAA 938 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||| ||||| || | || | | ||||||||| |||||| ||||| | Sbjct 939 GATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 998 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | ||| || || | ||||| || ||||| ||||| || || || Sbjct 999 CTCAATGGTGTCGGAGGCTTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCAC 1058 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 1059 GAAGATCTGCAT 1070 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| ||||| ||||| |||||||| || || || || |||| ||| Sbjct 1223 ACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTCG 1282 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| || | ||| ||||| || | || | | |||||||||| | Sbjct 1283 AGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 1342 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || | | || || | ||||| || | ||||| || ||| Sbjct 1343 ATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCACTTCGAGGGTGATCGTCTTG 1402 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || ||||| || || || |||||||||||| Sbjct 1403 CCGGTCAGGGTCTTCACGAAGATTTGCATT 1432 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || | ||||| | || ||||||||||| |||||||| Sbjct 1469 TCCTTTTGGATGTTGTAGTCCGACAATGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAG 1528 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||| || || | || | || ||||||||| |||||| ||||| || Sbjct 1529 ATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 1588 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||| || || | ||||| || |||||||||| || || || Sbjct 1589 TCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACG 1648 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 1649 AAGATCTGCAT 1659 Score = 105 bits (116), Expect = 8e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| | || ||||| ||||| |||||||| Sbjct 19 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAA 78 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||| || || | || | || |||||||| |||||| ||||| | Sbjct 79 GATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATT 138 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || || | || || || ||||| |||| || || || Sbjct 139 CTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTTATCGTCTTGCCAGTCAAGGTCTTCAC 198 Query 46582 AAAGATTTGCATT 46594 |||||||||||| Sbjct 199 GAAGATTTGCATT 211 >seq4834 Length=88581 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || ||||| || |||| || ||||| || ||||| || Sbjct 21148 CTCCTTCTGAATGTTGTAGTCTGAAAGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCAAA 21207 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||| ||||||| || | || ||||| || |||||| ||| | | Sbjct 21208 GATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTT 21267 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || || | |||||||| || || || ||||| || || Sbjct 21268 CTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTGAGCGTCTTGAC 21327 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 21328 AAAGATTTGCAT 21339 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||||| ||||| |||| ||||||||||| |||||||| Sbjct 22353 CTCCTTCTGGATGTTGTAGTCGGATAACGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 22412 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||| |||||||| | || | || ||||| || |||||| ||| | | Sbjct 22413 GATGAGGCGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTT 22472 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||| || || | ||||| || || || || ||||| || || Sbjct 22473 CTCGATAGTATCCGAGGCTTCGACTTCAAGGGTGATTGTCTTCCCGGTAAGCGTCTTCAC 22532 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 22533 GAAGATCTGCAT 22544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||||| |||||| |||| ||||||||||| |||||||| Sbjct 22581 CTCCTTCTGGATGTTGTAGTCGGATAAAGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAA 22640 Query 46462 TATCAAGCGCTGCTGG 46477 || | ||| |||||| Sbjct 22641 GATGAGGCGTTGCTGG 22656 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 46449 GCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCT 46508 |||| |||||||| |||| |||||||||||||| || | || ||||||||| |||| Sbjct 22922 GCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCT 22981 Query 46509 TCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCG 46568 | ||||| | | | |||||| || || || || | |||||||| || || | Sbjct 22982 TAGCCTTGACGTTTTCGATGGTGTCGGACGCCTCAACCTCAAGGGTGATGGTCTTTCCGG 23041 Query 46569 TCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| || ||||| ||||| Sbjct 23042 TAAGAGTTTTGACGAAGATCTGCAT 23066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565185338245200