Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq5063 136 4e-27
seq2066 113 5e-20
seq4834 104 3e-17
>seq5063
Length=4177
Score = 136 bits (150), Expect = 4e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | ||| |||||| ||||| ||||||||||| |||||||| | || |||
Sbjct 2229 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCG 2288
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||| |||||||| ||||||||||| || || | || | | || |||||| |
Sbjct 2289 AGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 2348
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||||| || | | ||||||| | ||| || || | ||||| || |||
Sbjct 2349 ATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTG 2408
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| || || || || |||||||||||||||
Sbjct 2409 CCGGTGAGAGTCTTCACAAAGATTTGCATT 2438
Score = 114 bits (126), Expect = 1e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||| || || ||||| | || ||||| ||||| ||||||||
Sbjct 2623 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAG 2682
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||| || || | || | | ||||||||| |||||| ||||| ||
Sbjct 2683 ATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 2742
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | |||||| | ||| || || | ||||| || ||||| ||||| || || ||
Sbjct 2743 TCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTCACG 2802
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 2803 AAGATTTGCAT 2813
Score = 109 bits (120), Expect = 6e-19
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| ||||||||| |||| |||||||||||||| || ||
Sbjct 1703 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCGTCTTCGAGCTGCTTGCCAGCAAA 1762
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509
|||| ||||||||| |||| || | | |||||||||| |||||
Sbjct 1763 GATCAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTCCTGAATCTT 1810
Score = 104 bits (114), Expect = 3e-17
Identities = 83/100 (83%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||| || ||||||||| |||| ||||||||||| ||||| ||
Sbjct 1933 CTCCTTCTGGATATTGTAGTCCGAGAGAGTGCGCCCGTCTTCGAGCTGCTTTCCGGCAAA 1992
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501
|| | ||||||||| |||| || | | ||||||||||
Sbjct 1993 GATGAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTCC 2032
>seq2066
Length=2850
Score = 113 bits (124), Expect = 5e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || || || |||| ||||||||||| ||||||||
Sbjct 879 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAA 938
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||| ||||| || | || | | ||||||||| |||||| ||||| |
Sbjct 939 GATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTT 998
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| | ||| || || | ||||| || ||||| ||||| || || ||
Sbjct 999 CTCAATGGTGTCGGAGGCTTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCAC 1058
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 1059 GAAGATCTGCAT 1070
Score = 113 bits (124), Expect = 5e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | ||| ||||| ||||| |||||||| || || || || |||| |||
Sbjct 1223 ACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTCG 1282
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| |||||||| || | ||| ||||| || | || | | |||||||||| |
Sbjct 1283 AGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 1342
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||||| || | | || || | ||||| || | ||||| || |||
Sbjct 1343 ATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCACTTCGAGGGTGATCGTCTTG 1402
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| ||||| || || || ||||||||||||
Sbjct 1403 CCGGTCAGGGTCTTCACGAAGATTTGCATT 1432
Score = 111 bits (122), Expect = 2e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||| |||||||| || | ||||| | || ||||||||||| ||||||||
Sbjct 1469 TCCTTTTGGATGTTGTAGTCCGACAATGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAG 1528
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | |||||| || || | || | || ||||||||| |||||| ||||| ||
Sbjct 1529 ATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTC 1588
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||| | ||| || || | ||||| || |||||||||| || || ||
Sbjct 1589 TCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACG 1648
Query 46583 AAGATTTGCAT 46593
||||| |||||
Sbjct 1649 AAGATCTGCAT 1659
Score = 105 bits (116), Expect = 8e-18
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || |||||||| | || ||||| ||||| ||||||||
Sbjct 19 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAA 78
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||| || || | || | || |||||||| |||||| ||||| |
Sbjct 79 GATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATT 138
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| | ||| || || | || || || ||||| |||| || || ||
Sbjct 139 CTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTTATCGTCTTGCCAGTCAAGGTCTTCAC 198
Query 46582 AAAGATTTGCATT 46594
||||||||||||
Sbjct 199 GAAGATTTGCATT 211
>seq4834
Length=88581
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || |||||||| || ||||| || |||| || ||||| || ||||| ||
Sbjct 21148 CTCCTTCTGAATGTTGTAGTCTGAAAGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCAAA 21207
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||| ||||||| || | || ||||| || |||||| ||| | |
Sbjct 21208 GATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTT 21267
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| | ||| || || | |||||||| || || || ||||| || ||
Sbjct 21268 CTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTGAGCGTCTTGAC 21327
Query 46582 AAAGATTTGCAT 46593
||||||||||||
Sbjct 21328 AAAGATTTGCAT 21339
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||||| ||||| |||| ||||||||||| ||||||||
Sbjct 22353 CTCCTTCTGGATGTTGTAGTCGGATAACGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 22412
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||| |||||||| | || | || ||||| || |||||| ||| | |
Sbjct 22413 GATGAGGCGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTT 22472
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || || | ||| || || | ||||| || || || || ||||| || ||
Sbjct 22473 CTCGATAGTATCCGAGGCTTCGACTTCAAGGGTGATTGTCTTCCCGGTAAGCGTCTTCAC 22532
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 22533 GAAGATCTGCAT 22544
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||||| |||||| |||| ||||||||||| ||||||||
Sbjct 22581 CTCCTTCTGGATGTTGTAGTCGGATAAAGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAA 22640
Query 46462 TATCAAGCGCTGCTGG 46477
|| | ||| ||||||
Sbjct 22641 GATGAGGCGTTGCTGG 22656
Score = 82.4 bits (90), Expect = 9e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 46449 GCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCT 46508
|||| |||||||| |||| |||||||||||||| || | || ||||||||| ||||
Sbjct 22922 GCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCT 22981
Query 46509 TCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCG 46568
| ||||| | | | |||||| || || || || | |||||||| || || |
Sbjct 22982 TAGCCTTGACGTTTTCGATGGTGTCGGACGCCTCAACCTCAAGGGTGATGGTCTTTCCGG 23041
Query 46569 TCAGCGTTTTAACAAAGATTTGCAT 46593
| || ||||| || ||||| |||||
Sbjct 23042 TAAGAGTTTTGACGAAGATCTGCAT 23066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565185338245200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |