Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq6307 269 3e-67 seq71 158 2e-33 seq48 143 3e-29 >seq6307 Length=70653 Score = 269 bits (298), Expect = 3e-67 Identities = 823/1279 (64%), Gaps = 63/1279 (5%) Strand=Plus/Plus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||| || ||| || | ||| || |||||||| | ||||| | ||| | Sbjct 13920 GTCATGACACCGCCGGCAGTCTCAATTCCGAGGGACAGAGGAGCGACGTCGAGGAGGAGA 13979 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 ||||| ||||| | |||| || ||||| | | ||||||||| ||||| | || ||| Sbjct 13980 AGGTCCTGAACGGCTTCGCTCTTGTCACCAGAGAGGATGGCGGCCTGGACGGCAGCTCCG 14039 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || ||||| |||||||||||||| || | || || ||||| || || || | ||| Sbjct 14040 TAGGCGACGGCCTCATCGGGGTTGATGCTCTTGTTAAGTTCCTTGCCAGAGAAGAAGTCC 14099 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | | || | || ||||| || || ||||||||||| | ||||| || | Sbjct 14100 GAGAGGAGCTTCTGGACCTTGGGGATACGGGTGGATCCACCGACAAGGACGATATCGTGG 14159 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | | || || || ||||| | ||| || | | || || || || ||||| | Sbjct 14160 ATCTGGGACTTGTCCATCTTGGCGTCACGGATGGCCTTCTCCACGGGGTCCATGGTGCTG 14219 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | || ||||||||||| || || |||||||| ||| || ||||| || Sbjct 14220 CGGAAGAGATCAGCGCACAGTTCCTCGAAGCGAGCACGGGTGATGTTGGTGTAGAAGTCG 14279 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTT---------GTTTGT------------ 7324 || || ||| | | || || ||||||||| | || || Sbjct 14280 ACACCATCGAAGAGGGAGTCGATTTCAATGCTAAAGACAGAAGTAAGTAAATAGCACAGG 14339 Query 7325 -----------------GCCGTCGAAGAT------AACGTTCGCTTTGCGCGCTCACACG 7361 ||| ||||| | ||| ||||| ||||| || || | Sbjct 14340 ATACATCAGCTTACCTAGCCTGAGAAGAGCTGGAGAGCGTACGCTTGGCGCGTTCGCAAG 14399 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | ||| || |||||||| | ||| || | ||| ||||| || || || | Sbjct 14400 CGGTGCGCAGACGGCGGAGGGCACGGGCGTTGGAGGTGAGATCCTTCTTGTGCTTGCGCT 14459 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 | ||||| | |||||| | ||||| ||||| || |||||||| | || | Sbjct 14460 TGAACTCGGCGACGAAGTGGTTGACCAGTCTGTTGTCGAAGTCCTCACCACCAAGATGAG 14519 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || | |||||||| ||||| || | || ||| | | | ||||||| Sbjct 14520 TGTCTCCGGCAGTAGACTTGACTTCGAAGATTCCGTCCTCGATGGTCAGGATGGAAACAT 14579 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CG-TATC--GTCGTCTTTGTTC 7597 | || ||||| || || || || || ||||| ||||| || | || || | ||| | Sbjct 14580 CGAAGGTACCGCCTCCAAGATCGAAGATGAGCACGTTGCGCTCTCCAGTGGCCTT----C 14635 Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 || || | ||||||||||||||| || || || || || || || || || ||| ||| Sbjct 14636 TTGTCCAAACCGTACGCGATAGCGGCAGCAGTCGGCTCGTTGATGATTCGGAGAACGTTG 14695 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 || |||||||| | | || || || || || || || || ||||| |||||||| Sbjct 14696 AGACCAGCAATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGCTGTCGTTGAAGTAGGCG 14755 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTC 7777 || || || | ||| |||||| |||| | |||| || | | || || | || ||| Sbjct 14756 GGCACGGTGATGACAGCGTCCTTGACAATGCTACCCAGGAAGGCCTCGGCAGTTTCCTTC 14815 Query 7778 ATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTA 7837 || || || || |||||||| || ||||| || | || |||| || || || || || Sbjct 14816 ATCTTCGTCAGGACCATCGACGAGATCTCCTCCGGCGTGAACTTCTTGGTCTCGCCCTTG 14875 Query 7838 AAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCT 7897 | || || | | || || | | | ||| || ||||| | | ||| | Sbjct 14876 TACTCCACCTGGACGCGAGGCTTGCCTCCTTCGTCGGCGACGACCTTGAAGGGCCAGTGC 14935 Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||| || || || | || | ||||| | |||||| || ||||| || || Sbjct 14936 TTCATGTCCGACTGCACGGCGTCATCGGTGAACTTGCGTCCGATGAGGCGCTTGGCGTCG 14995 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| |||||||| || |||||||| || ||||| || || ||||| Sbjct 14996 AACACGGTGTTCACTGGGTTCATCGCCACCTGGTTCTTGGCGGCGTCTCCAATCAGACGC 15055 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCG--------ATTCCCTTGGT 8069 || | || || || ||||||| || || ||||| || || |||| Sbjct 15056 TC---GGTGTCTGTGAAGCCGACGTAGGAGGGCGTCGTGCGGNNNNNNNNNNACCCTGGT 15112 Query 8070 CGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTC 8129 |||| || || ||||| || | ||| |||| ||||||||||| || || || | Sbjct 15113 CGTTGGCGATGATTTCCACCTTGCCGTGCATGAAGACACCGACGCACGAGTAGGTCGTGC 15172 Query 8130 CTAAATCAATACCGATTGC 8148 | | || || ||||| || Sbjct 15173 CCAGGTCGATTCCGATAGC 15191 >seq71 Length=89762 Score = 158 bits (174), Expect = 2e-33 Identities = 238/338 (70%), Gaps = 3/338 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| ||||||||||| ||||| || ||| || || || |||| || Sbjct 10052 TCGAAGTCTTCGCCACCCAAGTGAGTATCTCCGTTGGTAGCAAGAACCTCGAAGACTCCA 9993 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | | || || || || |||||||| |||| || || | ||| | | Sbjct 9992 TTGTCGATCGTGAGGAGAGAGACGTCGAAGGTACCACCTCCCAAATCGAACACGAGGATG 9933 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || |||| || ||| || || ||||| || ||||| || || || ||||| Sbjct 9932 TTGCGCTCTCCGTCCTT---CTTGTCAAGGCCGTAGGCAATAGCGGCAGCGGTAGGTTCG 9876 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||||| | ||||| |||||||| | ||||| || || || || || Sbjct 9875 TTGATGATACGAACAACGTTCAAACCAGCAATGACACCGGCATCCTTGGTGGCCTGACGC 9816 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | |||||| ||||| || || || || || || |||| | |||||| ||| |||||| Sbjct 9815 TGGGCATCGTTGAAGTAAGCAGGCACAGTGACAACGGCGTGCTTGACTTCCTTTCCGAGA 9756 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 |||||||| ||||| || ||||| || ||||||||| Sbjct 9755 TACGATTCAGCGATTTCCTTCATCTTTCCAAGAACCAT 9718 Score = 100 bits (110), Expect = 4e-16 Identities = 174/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 || |||||||| ||||| | || || || | | || || | |||||| ||||| Sbjct 9570 TTAATATCGTCCTGGACAACCTTCTCGGAGAAATCACGGCCAATCAAACGCTTGGCATCG 9511 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || | ||||||| ||||| ||| ||||||||||| || || || || ||||| Sbjct 9510 AAGATAGTGTTTTCCGGGTTGGTGGTAAGCTGGTTCTTCGCGGCATCTCCAATCAGACGC 9451 Query 8018 TCA--TTATTTTCCG-TAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTC 8074 ||| ||| |||| | || || ||||| || ||||| | || || || || ||||| Sbjct 9450 TCACCAGATTCTCCGCTGAAGGCAACGTAGGAAGGGGTGATACGGTTTCCCTGATCGTTG 9391 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAA 8134 || |||||||| ||||| |||| | |||| || ||||| ||||| || || | | Sbjct 9390 GCGATAATTTCAACGCGTCCGTTCTTGTAGACACCAACGCAACTGTACGTCGTACCAAGA 9331 Query 8135 TCAATACCGAT 8145 || || ||||| Sbjct 9330 TCGATTCCGAT 9320 >seq48 Length=185442 Score = 143 bits (158), Expect = 3e-29 Identities = 311/456 (68%), Gaps = 12/456 (3%) Strand=Plus/Minus Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 ||||| |||| | ||||||||||||||| ||||| || |||||| | || || |||||| Sbjct 29520 CAATGCTTAAGATCGAAACATCAAACGTTCCACCGCCGAGGTCATAGATCAGCACGTTCT 29461 Query 7581 TATCGTCGTCTTTGTTC-TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 | ||| | | | | || || || | ||| || || | ||| || || || ||||| || Sbjct 29460 TCTCGCCCT-TCAGCTCATTGTCCAAACCATAAGCCAAAGCAGCAGCTGTCGGTTCGTTG 29402 Query 7640 ATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || || || | |||| |||| ||||| || || | || || || || ||||| || || Sbjct 29401 ATGATGCGCATGACA-TTCAATCCAGCGATCTTTCCGGCGTCCTTTGTAGCTTGACGCTG 29343 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 ||||| ||||||||||| || || | || |||||| |||| | || | || Sbjct 29342 ATTGTCGTTGAAGTAGGCCGGTACAGTGATTACGGCGTCCTTGACCGGGTGGCCCAAGTA 29283 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 | ||| ||| | || |||||||| || || ||||| || || ||||| | | || Sbjct 29282 GGCTTCGGCGGTTTCCTTCATTTTTGTGAGTACCATGGAGCTTATTTCTTCTGGAGTGAA 29223 Query 7819 CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCG----CAGCACCGG 7874 | ||| |||| || || | || ||||||||||| || || |||| |||| || Sbjct 29222 TCGCTTCCTTTCGCCCTTGTATTCGACTTCAATCATCGGCTT-TCCGTTTCCAGCGTCGA 29164 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 || | | | ||| ||| | ||||||||||| || || ||| | |||| Sbjct 29163 AGACA--CGGA-ACGGCCAGTGTTTCATATCGTTCTGAACGGTCACCTCCTCCATTTTTC 29107 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTT 7970 ||| || || ||||| || || || |||| ||||| Sbjct 29106 GTCCAATGAGGCGCTTAGCGTCGAATACTGAGTTTT 29071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635073176908400