Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2066 183 7e-41 seq5063 159 8e-34 seq4834 149 1e-30 seq5213 93.3 9e-14 seq471 93.3 9e-14 >seq2066 Length=2850 Score = 183 bits (202), Expect = 7e-41 Identities = 167/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || |||||||| || || || ||||| || | |||||| | ||||| || Sbjct 1 AACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 60 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || |||||||| || || ||||| ||||| ||||||||||| |||||||| Sbjct 61 GAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCTTG 120 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || |||||| |||||||||||||| ||| ||| ||||| || || | |||||| Sbjct 121 AATCTTCGCCTTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTTATCGTCTT 180 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || ||||| | ||||||| Sbjct 181 GCCAGTCAAGGTCTTCACGAAGATTTGCATT 211 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| ||||||||||| || || ||||| || ||||| || | | || | Sbjct 1442 AGTCGGAGAACCAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCCGACAATGTGCGG 1501 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| ||||||||||| || |||||||| || || ||||| ||||| ||||||||||| Sbjct 1502 CCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCC 1561 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || |||||||||||| ||||||||||| ||| ||||| ||||| Sbjct 1562 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTG 1621 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || ||||| || || ||||| | ||||| Sbjct 1622 ATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1659 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| |||||||| |||||||| || || || ||||| || | || |||| Sbjct 853 AGTCGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGT 912 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || |||||||||||||| || |||||||| || ||||| || ||||| || || || || Sbjct 913 CCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCC 972 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || ||||||||||||||||||||| || ||| ||||| || || Sbjct 973 TTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACTTCGAGAGTG 1032 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || |||| || || ||||| | ||||| Sbjct 1033 ATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1070 Score = 163 bits (180), Expect = 6e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| || || || || || ||||| || | || |||| || |||||| Sbjct 1223 ACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTCG 1282 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || ||||| || ||||| || || || || ||||| || Sbjct 1283 AGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 1342 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| ||||| |||||| |||||||| ||||| | |||||| Sbjct 1343 ATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCACTTCGAGGGTGATCGTCTTG 1402 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| || || ||||| | ||||||| Sbjct 1403 CCGGTCAGGGTCTTCACGAAGATTTGCATT 1432 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || |||||||| || || || ||||| || | || || | ||||| || Sbjct 1945 AACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 2004 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || |||||||| | || ||||| ||||| ||||| ||||| ||||| || Sbjct 2005 GAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTG 2064 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||| ||||||||||| ||| ||||| ||||| | |||||| Sbjct 2065 GATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTT 2124 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 2125 GCCCGTCAAGGTCTTCACGAAGATCTGCAT 2154 Score = 104 bits (114), Expect = 5e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| |||||||| || || ||||| ||||| ||||||||||| ||||| || |||| Sbjct 615 GCTTACCGGCGAAGATCAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGGATTT 674 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 | ||| || || || ||||| |||||| |||||||| ||||| | |||||| Sbjct 675 TGGCCTTCACATTTTCGATGGTATCCGAAGCCTCCACTTCGAGGGTGATCGTCTT 729 >seq5063 Length=4177 Score = 159 bits (176), Expect = 8e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || ||||| || || || ||||| |||| |||||| | ||||| || Sbjct 2228 AACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTC 2287 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || |||||||| | || ||||| ||||| ||||| ||||||||||| || Sbjct 2288 GAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCCTG 2347 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||| || ||||| || ||| ||||| ||||| | |||||| Sbjct 2348 GATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTT 2407 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | ||| || || || | ||||||| Sbjct 2408 GCCGGTGAGAGTCTTCACAAAGATTTGCATT 2438 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| || || || || || ||||| || | || || | ||||| ||| Sbjct 2605 ACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCG 2664 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| | || ||||| ||||| ||||| ||||| ||||| || Sbjct 2665 AGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGG 2724 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||| |||||||| || ||| ||||| ||||| | |||||| Sbjct 2725 ATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTG 2784 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | |||||| Sbjct 2785 CCGGTCAGGGTCTTCACGAAGATTTGCAT 2813 Score = 147 bits (162), Expect = 5e-30 Identities = 143/184 (78%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||||||||| || || || ||||| |||| ||||| | ||| ||||| Sbjct 1685 AACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCGTCTTC 1744 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || || ||||| || || || || || || || || || || ||||| || Sbjct 1745 GAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTCCTG 1804 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || || |||||||||||||| ||| |||||||| || | ||||| Sbjct 1805 AATCTTGGCCTTCACATTTTCAATGGTGTCCGAGGCTTCGACTTCAAGAGTGATGGTCTT 1864 Query 195111 TCCT 195114 |||| Sbjct 1865 TCCT 1868 Score = 131 bits (144), Expect = 4e-25 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| | ||| || |||||||| || || || ||||| || | || || | Sbjct 3162 GAGTCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACG 3221 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || |||||||||||||| || || ||||| || ||||| |||||||| || || ||||| Sbjct 3222 TCCGTCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGTTGCTGGTCTGGGGGGATTCCTTC 3281 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 |||||||| || || |||||||||||| ||||||||||| Sbjct 3282 CTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGA 3323 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||||||||| || || |||||||| || | ||||| | ||| |||||| Sbjct 1916 ACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAGAGAGTGCGCCCGTCTTCG 1975 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || || || || || || || || ||||| ||| Sbjct 1976 AGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTCCTGA 2035 Query 195052 AT 195053 || Sbjct 2036 AT 2037 >seq4834 Length=88581 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||||||||| || || || ||||| |||| | || | || || || Sbjct 22335 AACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGATAACGTGCGGCCGTCCTC 22394 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| || ||||| ||||| ||||| |||||||| || ||||| Sbjct 22395 GAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTTG 22454 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| |||||||| || || ||||| ||| ||||||||||| | ||||| Sbjct 22455 AATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCGACTTCAAGGGTGATTGTCTT 22514 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 22515 CCCGGTAAGCGTCTTCACGAAGATCTGCAT 22544 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||| |||| |||||||| || || || ||||| ||||| |||||||| || || || || Sbjct 21469 TGCATACCAGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATC 21528 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || |||||||||||| || |||||||| ||| ||||| ||||| | ||||| || Sbjct 21529 TTGGCCTTGACGTTCTCGATTGTGTCCGAGGCTTCGACTTCGAGGGTGATGGTCTTCCCG 21588 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||| || || || | ||||| Sbjct 21589 GTAAGAGTCTTGACAAAGATCTGCAT 21614 >seq5213 Length=43260 Score = 93.3 bits (102), Expect = 9e-14 Identities = 111/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| || ||||| || || ||||| || | ||| |||||||| ||||| || || | Sbjct 11231 GCTTACCGGCAAAGATCAGGCGCTGTTGATCGGAAGGGATGCCTTCCTTGTCCTGGATCT 11290 Query 195056 TT-TG---CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 | || |||||||||||| || || |||||| ||| ||||| | ||| |||||| Sbjct 11291 TCCTGGGCCTTGACGTTCTCGATCGTATCCGAAGCTTCGACTTCGCGACTAATGGTCTTT 11350 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || || || || | |||||| Sbjct 11351 CCGGTAAACGTCTTGACAAAGATTTGCAT 11379 >seq471 Length=2147 Score = 93.3 bits (102), Expect = 9e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||||||| || ||||| || || ||||| || || || || || || || || || |||| Sbjct 1948 GCTTACCGGCAAAGATCAGGCGCTGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATTT 2007 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| || || || ||||| |||||| ||| |||||||| || | |||||||||| Sbjct 2008 TGGCCTTCACATTTTCGATGGTATCCGAAGCTTCGACTTCAAGAGTGATGGTCTTTCCTG 2067 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 | | || || ||||| | |||||| Sbjct 2068 TGAGCGTCTTGACGAAGATCTGCATT 2093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109374843600170