Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2066 118 7e-22
seq4834 107 1e-18
seq5063 95.1 8e-15
>seq2066
Length=2850
Score = 118 bits (130), Expect = 7e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||| ||||| ||| || ||||| ||||| |||||||| ||| ||||| | || ||
Sbjct 861 AACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTC 920
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| |||||||| || || || |||||||| ||| | || | |||||||||||
Sbjct 921 GAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCTTG 980
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||| |||||| | || | || ||| || || |||| || || || ||
Sbjct 981 GATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACTTCGAGAGTGATCGTCTT 1040
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || |||||||| |||||||||||
Sbjct 1041 GCCGGTCAGGGTCTTCACGAAGATCTGCAT 1070
Score = 116 bits (128), Expect = 2e-21
Identities = 155/213 (73%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||||| || ||| ||||| ||||| |||||||| ||| ||||| | || ||
Sbjct 1223 ACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTCG 1282
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| |||||||| || || || |||||||| ||| | || | |||||||||||
Sbjct 1283 AGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 1342
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948
||||| ||||| | | ||||| | ||| ||||| || |||| ||| || ||
Sbjct 1343 ATCTTGGCCTTGAC----GTTCTCGATGGTATCCGAAGCCTCCACTTCGAGGGTGATCGT 1398
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || || |||||||| ||||| |||||
Sbjct 1399 CTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 1431
Score = 98.7 bits (108), Expect = 6e-16
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||| | ||| || ||||| ||||| ||||||||||| | || |||| ||
Sbjct 1 AACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 60
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| || |||||||| || || || || || || ||| | || | || ||||||||
Sbjct 61 GAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCTTG 120
Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949
||||||| ||||| || || || | ||| || || || |||| ||||| ||
Sbjct 121 AATCTTCGCCTTGAC--ATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTTATCGTC 178
Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || | |||||||| ||||| |||||
Sbjct 179 TTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 210
Score = 95.1 bits (104), Expect = 8e-15
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||| | ||| || ||||| ||||| |||||||| ||| | || |||| ||
Sbjct 1945 AACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTC 2004
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| || |||||||| || || | || || || ||| | || | || ||||||||
Sbjct 2005 GAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTG 2064
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||| |||||| | || | || ||| || || |||| ||| || || ||
Sbjct 2065 GATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTT 2124
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| | |||||||| |||||||||||
Sbjct 2125 GCCCGTCAAGGTCTTCACGAAGATCTGCAT 2154
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||| ||||| || ||| || || ||||| |||||||| | | || |||| ||
Sbjct 1450 AACCAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCCGACAATGTGCGGCCATCCTC 1509
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| |||||||| || || || || || || ||| | || | || ||||||||
Sbjct 1510 GAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCCTG 1569
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||| |||||| | || | || ||| || || |||| ||| || || ||
Sbjct 1570 GATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTT 1629
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| | |||||||| |||||||||||
Sbjct 1630 GCCCGTCAAGGTCTTCACGAAGATCTGCAT 1659
>seq4834
Length=88581
Score = 107 bits (118), Expect = 1e-18
Identities = 153/213 (72%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || ||||||||||| ||||| ||||| | || | || ||
Sbjct 21131 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTACGGCCGTCCTCA 21190
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||||||||||||||| || || || || ||||| | || | || ||||| || |
Sbjct 21191 AGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGA 21250
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948
|||||| || || | | ||||| | ||| || || || |||| ||| |||||
Sbjct 21251 ATCTTCGCCTTCAC----GTTCTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGATGGT 21306
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| ||||| ||||| |||||||| |||||
Sbjct 21307 CTTTCCGGTGAGCGTCTTGACAAAGATTTGCAT 21339
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||| | ||| || ||||| ||||| ||||| || | | || | || ||
Sbjct 22335 AACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGATAACGTGCGGCCGTCCTC 22394
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| |||||||| || || || ||||||||||| | || | || ||||| ||
Sbjct 22395 GAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGAGGGATGCCTTCCTTATCTTG 22454
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||||| || ||| | || | || ||| || || || | ||| || || ||
Sbjct 22455 AATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCGACTTCAAGGGTGATTGTCTT 22514
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || || |||||||| |||||||||||
Sbjct 22515 CCCGGTAAGCGTCTTCACGAAGATCTGCAT 22544
>seq5063
Length=4177
Score = 95.1 bits (104), Expect = 8e-15
Identities = 91/117 (78%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||| | ||| || ||||| ||||| |||||||| ||| | ||| | || ||
Sbjct 3171 AACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCGTCTTC 3230
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
||||| ||||||||||| || || |||||||||||| | || | || ||||||||
Sbjct 3231 GAGCTGCTTTCCGGCAAAGATGAGGCGTTGCTGGTCTGGGGGGATTCCTTCCTTGTC 3287
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| ||||| | || |||| || || || |||||||| ||
Sbjct 2247 TCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAG 2306
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || || || ||| | || | || || ||||| ||||| ||||||
Sbjct 2307 ATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTC 2366
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || ||| || || |||| ||| || || || || |||||||||||||||
Sbjct 2367 TCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACA 2426
Query 34971 AAGATCTGCAT 34981
||||| |||||
Sbjct 2427 AAGATTTGCAT 2437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324603886895280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |