Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4924 138 9e-28 seq2290 96.9 3e-15 >seq4924 Length=20857 Score = 138 bits (152), Expect = 9e-28 Identities = 140/182 (77%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 29848 TGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAG 29907 ||||||||||| || | || || || || || || ||||||| ||||||||| Sbjct 509 TGGACAAACTCACC----TTTAAGCCAGTCACATGCGCGATCATGTGAGTGAGGAGACCA 454 Query 29908 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA 29967 |||||||||||||| ||||| || || || |||| || || || | |||||| || ||| Sbjct 453 TAGCTGGCGATGTTGAAGGGCACTCCAAGGGCCATATCGCCGGAACGCTGGTATAGTTGA 394 Query 29968 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCC 30027 ||||| || || |||||||| || || |||||||||||||| |||||||| || | ||| Sbjct 393 CACGACAGTTCCCCGTCGCTTACATAGAACTGACACATGGTATGGCACGGTGGCAATGCC 334 Query 30028 AT 30029 || Sbjct 333 AT 332 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 29850 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29909 ||||||||| || | || || || || || || ||||||| || || ||| || Sbjct 728 GACAAACTCACC----TTTAAGCCAGTCACATGTGCTATCATGTGGGTTAGAAGACCATA 673 Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 |||||| ||||| ||||| || || || |||| || || || | |||||| | ||| || Sbjct 672 GCTGGCTATGTTGAAGGGCACTCCAAGGGCCATATCGCCGGAACGCTGGTACAACTGGCA 613 Query 29970 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTG 30009 ||| || || || ||||| ||||| ||||||||||||||| Sbjct 612 CGACAGTTCGCCATCGCTGACGTAGAACTGACACATGGTG 573 >seq2290 Length=1989 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940 || |||||||||| || || |||| |||||||||||| || ||||| || || || Sbjct 903 TGGGCCATCATGTGGGTCAGCAGAGCGTAGCTGGCGATATTGAAGGGCACACCCAGGAAA 962 Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30000 || ||| | | |||||||||||| || || |||| || ||| || || ||||| Sbjct 963 ATATCCGCACTGCGCTGGTAGAGCTGGCAGGACAGCTTGCCATCGGCTACATAGAACTGG 1022 Query 30001 CACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30060 ||| || |||||| || || |||||||| |||||| || ||||||||| | Sbjct 1023 AACAGGGCGTGGCAAGGGGGCAGAGCCATCTGGCCCACATCCGCCACGTTCCAGGCCGAG 1082 Query 30061 ACGATGATGCG 30071 ||||| | ||| Sbjct 1083 ACGATCAGGCG 1093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408580199997230