Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq4924 138 9e-28
seq2290 96.9 3e-15
>seq4924
Length=20857
Score = 138 bits (152), Expect = 9e-28
Identities = 140/182 (77%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 29848 TGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAG 29907
||||||||||| || | || || || || || || ||||||| |||||||||
Sbjct 509 TGGACAAACTCACC----TTTAAGCCAGTCACATGCGCGATCATGTGAGTGAGGAGACCA 454
Query 29908 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA 29967
|||||||||||||| ||||| || || || |||| || || || | |||||| || |||
Sbjct 453 TAGCTGGCGATGTTGAAGGGCACTCCAAGGGCCATATCGCCGGAACGCTGGTATAGTTGA 394
Query 29968 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCC 30027
||||| || || |||||||| || || |||||||||||||| |||||||| || | |||
Sbjct 393 CACGACAGTTCCCCGTCGCTTACATAGAACTGACACATGGTATGGCACGGTGGCAATGCC 334
Query 30028 AT 30029
||
Sbjct 333 AT 332
Score = 104 bits (114), Expect = 2e-17
Identities = 119/160 (74%), Gaps = 4/160 (3%)
Strand=Plus/Minus
Query 29850 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29909
||||||||| || | || || || || || || ||||||| || || ||| ||
Sbjct 728 GACAAACTCACC----TTTAAGCCAGTCACATGTGCTATCATGTGGGTTAGAAGACCATA 673
Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969
|||||| ||||| ||||| || || || |||| || || || | |||||| | ||| ||
Sbjct 672 GCTGGCTATGTTGAAGGGCACTCCAAGGGCCATATCGCCGGAACGCTGGTACAACTGGCA 613
Query 29970 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTG 30009
||| || || || ||||| ||||| |||||||||||||||
Sbjct 612 CGACAGTTCGCCATCGCTGACGTAGAACTGACACATGGTG 573
>seq2290
Length=1989
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940
|| |||||||||| || || |||| |||||||||||| || ||||| || || ||
Sbjct 903 TGGGCCATCATGTGGGTCAGCAGAGCGTAGCTGGCGATATTGAAGGGCACACCCAGGAAA 962
Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30000
|| ||| | | |||||||||||| || || |||| || ||| || || |||||
Sbjct 963 ATATCCGCACTGCGCTGGTAGAGCTGGCAGGACAGCTTGCCATCGGCTACATAGAACTGG 1022
Query 30001 CACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30060
||| || |||||| || || |||||||| |||||| || ||||||||| |
Sbjct 1023 AACAGGGCGTGGCAAGGGGGCAGAGCCATCTGGCCCACATCCGCCACGTTCCAGGCCGAG 1082
Query 30061 ACGATGATGCG 30071
||||| | |||
Sbjct 1083 ACGATCAGGCG 1093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408580199997230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |