Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq2257 237 1e-57 >seq2257 Length=8409 Score = 237 bits (262), Expect = 1e-57 Identities = 893/1380 (65%), Gaps = 48/1380 (3%) Strand=Plus/Minus Query 119134 GGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCATTCGTGGAGTTAGTGAT 119193 ||| | ||||| ||| | | | |||| || ||||||| |||||| |||| || | || Sbjct 6804 GGACTGCTTGACGGATACCAGACCACGCGGAGGCTCAATACCATTGGTGGCATTGGCAAT 6745 Query 119194 CTGGCTGGATGTCTCGCAAGGCATCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAAT 119253 ||||||||| || || ||||||||| | || ||| || ||||| ||||| || || | Sbjct 6744 CTGGCTGGAGGTTTCCGAAGGCATCAAGGCGGTCAGGGTCGAGTTGCGCAGACCGTGCTT 6685 Query 119254 CGCGATATCGACACGCAGCTTTTCCCAGTCCATCTTCAGTTCCGCAGTGTGGAGAGCATC 119313 ||||||| ||||||| |||||| |||| | ||| | | || || | | || Sbjct 6684 GACGATATCAGCACGCAGGGCTTCCCAATCCAGGTGCAGCGGCTCGTTGCAGATACCGTC 6625 Query 119314 CACCTCTTTTTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGTAAGTTGTCTCGTGGAA 119373 ||| ||||| ||||| |||| | ||||| | || | ||| || || || | ||| Sbjct 6624 CACATCTTTCTTGTAGGTGTCGGTAGGCAGCAAACCAGCGGCGTACGTCGTTTCATCGAA 6565 Query 119374 GAGATCACATTTGCCCAGTTCTTTTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTG 119433 | ||| || || ||| | || | ||||| || | || ||||| ||||| Sbjct 6564 GGCATCGCAAGGACCGTATTCGCGCGACAACTGCACCGAAGCCTTCAACAGGTAGTACTG 6505 Query 119434 GAATGCTTCAGCCAGTTCGT--GAACAG-CGTTAGCTGCACGAGGGTCGCTGTACTTCAT 119490 || |||||| | || || | ||| | || ||| || ||| ||| | Sbjct 6504 GATGGCTTCAAAC-GTGCGGTGGGTCAGACCCAAG--GCAGCGGGATCGGAGTAACGGGT 6448 Query 119491 CCCGCGCTTCGCCAGGTAGTACGCGAGGTTGGTCCAGCCAATCCCCAGTGTACGGCGCAG 119550 ||| ||| |||| |||||| ||| |||| | ||||| ||||| | || ||| Sbjct 6447 GCCGTTCTTGGCCAAGTAGTAAGCGTAGTTGATGACGCCAACGCCCAGGGAGCGACGCTT 6388 Query 119551 CTTGGTC---TTCTCTGCCGCCAGAACCGGGTAGTTCTGATAGTCCAGCAGTCGGTCCAG 119607 ||||| ||| ||| ||| |||||||||| ||| ||||||||||| ||||| Sbjct 6387 GTTGGTTGCGTTCAGTGCAGCCTTGACCGGGTAGTCCTGGTAGTCCAGCAGAGCATCCAG 6328 Query 119608 AGCACGAACCAGT-GTACGGACAGGCTCACGCATGTCTTCCAGCTTCTCGATCTTGCCAA 119666 ||||||||| | || | | ||| | | || || ||||| ||| | || | Sbjct 6327 AGCACGAACAATCAGTTCAGCCAGACCGTC-CAGCTCGTCCAGGGACTCCAGAGCACCCA 6269 Query 119667 GGTTAATGGCAGACAGAGTACACAGGGCTACCTCGCCCGGGTCTTCTGGATCGTTAATGT 119726 |||| | || ||||| || ||||| || | || || ||| |||||||| | | Sbjct 6268 GGTTGAAAGCCGACAGCGTGCACAGCGCGATTTCACC------TTCAGGATCGTTCAGAT 6215 Query 119727 CGTTGATCGGATGCGTCGGCAGCGCGATCTCCATACACAGGTTGGACTGCTTCACCGGGG 119786 |||| | || | || ||||| ||||| ||||| |||||||||||||| ||| || | Sbjct 6214 CGTTCAAAGGCTTGGTAGGCAGAGCGATTTCCATGCACAGGTTGGACTGGCGCACAGGAG 6155 Query 119787 CCTGTTTAGGGTCAAACGGGCTGTTGGTATTACAGTGGTCAACGTGCTGAACATAAATAC 119846 | | | || | || ||||||| || || || ||||| |||| ||||| || |||| Sbjct 6154 CGCGGTCAGCCTGGAATGGGCTGTGCGTGTTGCAATGGTCCACGTTCTGAATGTAGATAC 6095 Query 119847 GACCAGTTTGTGAACGCTCCTGCCCAAAGACAGAGAATGCGTCCGCCGCAGGGATAGACT 119906 | || || | |||||| ||| | | ||||| ||| | || || || || Sbjct 6094 GGCCGGTGCTGGCACGCTCTTGCATCAGCAAGGAGAACAGCTCCACGGCTGG--CAGGCT 6037 Query 119907 --TCTTCGCCACGGAAGGAT-CTGCT--TCCAGTTCCTCGTAAAGCTGTTGGAATTTCTC 119961 ||| | || ||||| ||||| | || | ||||| || | | ||| | || Sbjct 6036 GCGCTTGCGGATGGCAGGATCCTGCTCGTACATT---TCGTACAGACGCTCGAACTCGTC 5980 Query 119962 CTGATCAGAGAAGAAATATTCGTACAGCTTACCGCCAGCCA---CGTTCGGATGGAACAA 120018 ||| || | ||||| ||||||||| ||| | || ||| ||| ||||| Sbjct 5979 CTGGTCGGCAAAGAAGGCTTCGTACAG------GCCGGGCACGTCGTGCGGCGAGAACAG 5926 Query 120019 CGTGATGTTCTTGCCCTGCTGGAGGCGGGTATAAAGCAGCTTGTTGATCTGGAGGCCGTA 120078 |||||| | |||||| ||||| || |||| ||||||||| | ||||| Sbjct 5925 CGTGATATGGCTGCCCTTGATCAGGCGCTGGTACAGCAAGCGGTTGATCTGAACACCGTA 5866 Query 120079 GTCCACATGGCGAGCACGAGTGCTC-TCGGTGCCACGGTTGTTCTTCAGAACGATCAGGC 120137 ||||| || ||| ||| || || || |||||||||||||||||||| | ||| Sbjct 5865 GTCCAAGTGACGAATACG-GTTTTCTTCCACACCACGGTTGTTCTTCAGAACCAGCAGTG 5807 Query 120138 TCTCAAAATCCCAGTGCCACATCGGGTAGAAATAGTTAGCCGATGCCTTACGGACGCCGC 120197 | || | ||| ||||||||| |||||||| || | |||| | ||| ||||||| Sbjct 5806 TTTCCACTTCCAGGTGCCACATGGGGTAGAACAAGGTTGCCGCACCACCACGCACGCCGC 5747 Query 120198 CCTGAGAGGTCCACCCAAGAGACTCTTGGTACATGCGGACAATCGGCACGGTGCCTGCGT 120257 | || ||| || | | | ||| |||| || | ||||| | || | || Sbjct 5746 CTTGCGAGCAGGACTTCACCGCAGCCTGGAACATCTTGAAGAACGGCAGGCAACCCGTGT 5687 Query 120258 GTTTAACCTCACCACCACGAA--TGGCAGAATCCTGACCACGAATCATGCCGAAGTTCAG 120315 ||| | ||||||||||||| | || | | | | | ||||| ||| || | Sbjct 5686 GTTGTGCTTCACCACCACGAATTTCGCTGCCTACGG--CGCGAATGCGGCCACCATTGAT 5629 Query 120316 GCCGATCCCGGCTCGTTGAGCCGCATATTTACC--CTGCGC-CGTGTTGGCGTTAAAGAT 120372 ||||| ||||| || || | | | || | | |||| || |||| || ||| Sbjct 5628 ACCGATACCGGCACGCTGTGACACGTAACGAACAATGGCGCTGGTCGTGGCATT---GAT 5572 Query 120373 CTGGTCGATATTATCACCAGACTCAATCAGTACGCAAGAGCTAAACTGACGGGTCGGGGT 120432 ||| | | || || | || ||||| ||||||||||| ||||| || || || || Sbjct 5571 GCTGTCCAGGCTGTCGTCACATTCGATCAGCACGCAAGAGCTGAACTGGCGAGTGGGTGT 5512 Query 120433 ACGAACACCCGCCATGATCGGGGTCGGTAAAGACACCTTCATCAGCGATACGTTCTCGTA 120492 || || || |||||||| || || || || || | ||| | |||||||| ||||| Sbjct 5511 GCGCACGCCAGCCATGATGGGCGTGGGCAAGGAAATCTTGAATTGCGATACGGCGTCGTA 5452 Score = 199 bits (220), Expect = 4e-46 Identities = 259/356 (73%), Gaps = 4/356 (1%) Strand=Plus/Minus Query 118114 CATGATGTCGTCAAAGACGATCGACGGATC--TGCCAGGATGTTACGGATGATATGGGTG 118171 || |||||||||||| | | ||||| || || || || || || ||||| || ||| Sbjct 7584 CACGATGTCGTCAAAAATAACGGACGGGTCATTGGCA--ATATTGCGAATGATGTGCGTG 7527 Query 118172 TATGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTT 118231 || ||||| ||||| || ||||| ||| ||||| || || | ||| |||||||| Sbjct 7526 TACGAGCGCGAGTGAATCGTCTCGGAGAAAGCCCAGGTTTCAATCCAGGTTTCCAGCTCC 7467 Query 118232 GTGTCGGACACGATCGGGAGCAGAACTGCATTCGGCCCACGGCCCTGTACAGAATCCAGA 118291 | || || | || || | | | || || | |||||||| | |||||||| Sbjct 7466 GGAATCGATACCAAAGGCAGGAAGGCCACGTTGGGGCTGCGGCCCTGGATGGAATCCAGC 7407 Query 118292 AGGATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG 118351 | | |||| |||||||| ||||||||||| |||||||| ||||| || ||||| ||| Sbjct 7406 AAGGTCTGATACTTCAGATTGCTGATGAAAATGTGCTTTTCGTGGTCAGGCAGGTTCTGA 7347 Query 118352 TAGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGC 118411 |||||||| ||||| |||| | || ||||| ||||||||||||||||| | || ||| Sbjct 7346 TAGTCGATCCGGTCCTGGGTAATGTCCACTTCCTCCGGACGCCAGAAGAAGGACAACTGC 7287 Query 118412 TTCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTT 118467 || || |||||||| || || | | | ||| |||||||| ||||||| ||||| Sbjct 7286 TTTTCAATCAGCTTTTCAAAAATCGGATATTTTTGCTGGTCGTAGCGAGCCACGTT 7231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 117833 TGAGTGCCGGACAAATGCAAGGCTTCATCACGGGCAATCAGTTCAATAATGTTGGTGTTG 117892 || ||||| | || ||||| ||||||||||| ||||||| ||| || |||| ||| Sbjct 7898 TGCGTGCCAGTCAGATGCAGCGCTTCATCACGCGCAATCAAGCGAATGATCTTGGCATTG 7839 Query 117893 CCCAGCATTACCCCGCGCTCGCCGAACGCAAATGAGCAGGCGAAGCTCACGTAGAAGCGG 117952 || ||| | | ||||||| | || || || |||||||| ||||| ||||| |||||| Sbjct 7838 CCTTCCATCAGCTTGCGCTCGGCAAAGGCGAAGGAGCAGGCAAAGCTGACGTAAAAGCGG 7779 Query 117953 ATCGCTTCCAGTGCGTTGATATTGTGCAGGCACAGGTACAGC 117994 || || || || |||| | || ||||||||||||| Sbjct 7778 ATGGCCTCAAGAATATTGACGCTCATCATGCACAGGTACAGC 7737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477500770406800