Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_017974.1
Length=149273
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 237 1e-57
>seq2257
Length=8409
Score = 237 bits (262), Expect = 1e-57
Identities = 893/1380 (65%), Gaps = 48/1380 (3%)
Strand=Plus/Minus
Query 119134 GGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCATTCGTGGAGTTAGTGAT 119193
||| | ||||| ||| | | | |||| || ||||||| |||||| |||| || | ||
Sbjct 6804 GGACTGCTTGACGGATACCAGACCACGCGGAGGCTCAATACCATTGGTGGCATTGGCAAT 6745
Query 119194 CTGGCTGGATGTCTCGCAAGGCATCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAAT 119253
||||||||| || || ||||||||| | || ||| || ||||| ||||| || || |
Sbjct 6744 CTGGCTGGAGGTTTCCGAAGGCATCAAGGCGGTCAGGGTCGAGTTGCGCAGACCGTGCTT 6685
Query 119254 CGCGATATCGACACGCAGCTTTTCCCAGTCCATCTTCAGTTCCGCAGTGTGGAGAGCATC 119313
||||||| ||||||| |||||| |||| | ||| | | || || | | ||
Sbjct 6684 GACGATATCAGCACGCAGGGCTTCCCAATCCAGGTGCAGCGGCTCGTTGCAGATACCGTC 6625
Query 119314 CACCTCTTTTTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGTAAGTTGTCTCGTGGAA 119373
||| ||||| ||||| |||| | ||||| | || | ||| || || || | |||
Sbjct 6624 CACATCTTTCTTGTAGGTGTCGGTAGGCAGCAAACCAGCGGCGTACGTCGTTTCATCGAA 6565
Query 119374 GAGATCACATTTGCCCAGTTCTTTTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTG 119433
| ||| || || ||| | || | ||||| || | || ||||| |||||
Sbjct 6564 GGCATCGCAAGGACCGTATTCGCGCGACAACTGCACCGAAGCCTTCAACAGGTAGTACTG 6505
Query 119434 GAATGCTTCAGCCAGTTCGT--GAACAG-CGTTAGCTGCACGAGGGTCGCTGTACTTCAT 119490
|| |||||| | || || | ||| | || ||| || ||| ||| |
Sbjct 6504 GATGGCTTCAAAC-GTGCGGTGGGTCAGACCCAAG--GCAGCGGGATCGGAGTAACGGGT 6448
Query 119491 CCCGCGCTTCGCCAGGTAGTACGCGAGGTTGGTCCAGCCAATCCCCAGTGTACGGCGCAG 119550
||| ||| |||| |||||| ||| |||| | ||||| ||||| | || |||
Sbjct 6447 GCCGTTCTTGGCCAAGTAGTAAGCGTAGTTGATGACGCCAACGCCCAGGGAGCGACGCTT 6388
Query 119551 CTTGGTC---TTCTCTGCCGCCAGAACCGGGTAGTTCTGATAGTCCAGCAGTCGGTCCAG 119607
||||| ||| ||| ||| |||||||||| ||| ||||||||||| |||||
Sbjct 6387 GTTGGTTGCGTTCAGTGCAGCCTTGACCGGGTAGTCCTGGTAGTCCAGCAGAGCATCCAG 6328
Query 119608 AGCACGAACCAGT-GTACGGACAGGCTCACGCATGTCTTCCAGCTTCTCGATCTTGCCAA 119666
||||||||| | || | | ||| | | || || ||||| ||| | || |
Sbjct 6327 AGCACGAACAATCAGTTCAGCCAGACCGTC-CAGCTCGTCCAGGGACTCCAGAGCACCCA 6269
Query 119667 GGTTAATGGCAGACAGAGTACACAGGGCTACCTCGCCCGGGTCTTCTGGATCGTTAATGT 119726
|||| | || ||||| || ||||| || | || || ||| |||||||| | |
Sbjct 6268 GGTTGAAAGCCGACAGCGTGCACAGCGCGATTTCACC------TTCAGGATCGTTCAGAT 6215
Query 119727 CGTTGATCGGATGCGTCGGCAGCGCGATCTCCATACACAGGTTGGACTGCTTCACCGGGG 119786
|||| | || | || ||||| ||||| ||||| |||||||||||||| ||| || |
Sbjct 6214 CGTTCAAAGGCTTGGTAGGCAGAGCGATTTCCATGCACAGGTTGGACTGGCGCACAGGAG 6155
Query 119787 CCTGTTTAGGGTCAAACGGGCTGTTGGTATTACAGTGGTCAACGTGCTGAACATAAATAC 119846
| | | || | || ||||||| || || || ||||| |||| ||||| || ||||
Sbjct 6154 CGCGGTCAGCCTGGAATGGGCTGTGCGTGTTGCAATGGTCCACGTTCTGAATGTAGATAC 6095
Query 119847 GACCAGTTTGTGAACGCTCCTGCCCAAAGACAGAGAATGCGTCCGCCGCAGGGATAGACT 119906
| || || | |||||| ||| | | ||||| ||| | || || || ||
Sbjct 6094 GGCCGGTGCTGGCACGCTCTTGCATCAGCAAGGAGAACAGCTCCACGGCTGG--CAGGCT 6037
Query 119907 --TCTTCGCCACGGAAGGAT-CTGCT--TCCAGTTCCTCGTAAAGCTGTTGGAATTTCTC 119961
||| | || ||||| ||||| | || | ||||| || | | ||| | ||
Sbjct 6036 GCGCTTGCGGATGGCAGGATCCTGCTCGTACATT---TCGTACAGACGCTCGAACTCGTC 5980
Query 119962 CTGATCAGAGAAGAAATATTCGTACAGCTTACCGCCAGCCA---CGTTCGGATGGAACAA 120018
||| || | ||||| ||||||||| ||| | || ||| ||| |||||
Sbjct 5979 CTGGTCGGCAAAGAAGGCTTCGTACAG------GCCGGGCACGTCGTGCGGCGAGAACAG 5926
Query 120019 CGTGATGTTCTTGCCCTGCTGGAGGCGGGTATAAAGCAGCTTGTTGATCTGGAGGCCGTA 120078
|||||| | |||||| ||||| || |||| ||||||||| | |||||
Sbjct 5925 CGTGATATGGCTGCCCTTGATCAGGCGCTGGTACAGCAAGCGGTTGATCTGAACACCGTA 5866
Query 120079 GTCCACATGGCGAGCACGAGTGCTC-TCGGTGCCACGGTTGTTCTTCAGAACGATCAGGC 120137
||||| || ||| ||| || || || |||||||||||||||||||| | |||
Sbjct 5865 GTCCAAGTGACGAATACG-GTTTTCTTCCACACCACGGTTGTTCTTCAGAACCAGCAGTG 5807
Query 120138 TCTCAAAATCCCAGTGCCACATCGGGTAGAAATAGTTAGCCGATGCCTTACGGACGCCGC 120197
| || | ||| ||||||||| |||||||| || | |||| | ||| |||||||
Sbjct 5806 TTTCCACTTCCAGGTGCCACATGGGGTAGAACAAGGTTGCCGCACCACCACGCACGCCGC 5747
Query 120198 CCTGAGAGGTCCACCCAAGAGACTCTTGGTACATGCGGACAATCGGCACGGTGCCTGCGT 120257
| || ||| || | | | ||| |||| || | ||||| | || | ||
Sbjct 5746 CTTGCGAGCAGGACTTCACCGCAGCCTGGAACATCTTGAAGAACGGCAGGCAACCCGTGT 5687
Query 120258 GTTTAACCTCACCACCACGAA--TGGCAGAATCCTGACCACGAATCATGCCGAAGTTCAG 120315
||| | ||||||||||||| | || | | | | | ||||| ||| || |
Sbjct 5686 GTTGTGCTTCACCACCACGAATTTCGCTGCCTACGG--CGCGAATGCGGCCACCATTGAT 5629
Query 120316 GCCGATCCCGGCTCGTTGAGCCGCATATTTACC--CTGCGC-CGTGTTGGCGTTAAAGAT 120372
||||| ||||| || || | | | || | | |||| || |||| || |||
Sbjct 5628 ACCGATACCGGCACGCTGTGACACGTAACGAACAATGGCGCTGGTCGTGGCATT---GAT 5572
Query 120373 CTGGTCGATATTATCACCAGACTCAATCAGTACGCAAGAGCTAAACTGACGGGTCGGGGT 120432
||| | | || || | || ||||| ||||||||||| ||||| || || || ||
Sbjct 5571 GCTGTCCAGGCTGTCGTCACATTCGATCAGCACGCAAGAGCTGAACTGGCGAGTGGGTGT 5512
Query 120433 ACGAACACCCGCCATGATCGGGGTCGGTAAAGACACCTTCATCAGCGATACGTTCTCGTA 120492
|| || || |||||||| || || || || || | ||| | |||||||| |||||
Sbjct 5511 GCGCACGCCAGCCATGATGGGCGTGGGCAAGGAAATCTTGAATTGCGATACGGCGTCGTA 5452
Score = 199 bits (220), Expect = 4e-46
Identities = 259/356 (73%), Gaps = 4/356 (1%)
Strand=Plus/Minus
Query 118114 CATGATGTCGTCAAAGACGATCGACGGATC--TGCCAGGATGTTACGGATGATATGGGTG 118171
|| |||||||||||| | | ||||| || || || || || || ||||| || |||
Sbjct 7584 CACGATGTCGTCAAAAATAACGGACGGGTCATTGGCA--ATATTGCGAATGATGTGCGTG 7527
Query 118172 TATGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCGACCCATGTTTCCAGGGTT 118231
|| ||||| ||||| || ||||| ||| ||||| || || | ||| ||||||||
Sbjct 7526 TACGAGCGCGAGTGAATCGTCTCGGAGAAAGCCCAGGTTTCAATCCAGGTTTCCAGCTCC 7467
Query 118232 GTGTCGGACACGATCGGGAGCAGAACTGCATTCGGCCCACGGCCCTGTACAGAATCCAGA 118291
| || || | || || | | | || || | |||||||| | ||||||||
Sbjct 7466 GGAATCGATACCAAAGGCAGGAAGGCCACGTTGGGGCTGCGGCCCTGGATGGAATCCAGC 7407
Query 118292 AGGATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG 118351
| | |||| |||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct 7406 AAGGTCTGATACTTCAGATTGCTGATGAAAATGTGCTTTTCGTGGTCAGGCAGGTTCTGA 7347
Query 118352 TAGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGC 118411
|||||||| ||||| |||| | || ||||| ||||||||||||||||| | || |||
Sbjct 7346 TAGTCGATCCGGTCCTGGGTAATGTCCACTTCCTCCGGACGCCAGAAGAAGGACAACTGC 7287
Query 118412 TTCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTT 118467
|| || |||||||| || || | | | ||| |||||||| ||||||| |||||
Sbjct 7286 TTTTCAATCAGCTTTTCAAAAATCGGATATTTTTGCTGGTCGTAGCGAGCCACGTT 7231
Score = 95.1 bits (104), Expect = 1e-14
Identities = 118/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 117833 TGAGTGCCGGACAAATGCAAGGCTTCATCACGGGCAATCAGTTCAATAATGTTGGTGTTG 117892
|| ||||| | || ||||| ||||||||||| ||||||| ||| || |||| |||
Sbjct 7898 TGCGTGCCAGTCAGATGCAGCGCTTCATCACGCGCAATCAAGCGAATGATCTTGGCATTG 7839
Query 117893 CCCAGCATTACCCCGCGCTCGCCGAACGCAAATGAGCAGGCGAAGCTCACGTAGAAGCGG 117952
|| ||| | | ||||||| | || || || |||||||| ||||| ||||| ||||||
Sbjct 7838 CCTTCCATCAGCTTGCGCTCGGCAAAGGCGAAGGAGCAGGCAAAGCTGACGTAAAAGCGG 7779
Query 117953 ATCGCTTCCAGTGCGTTGATATTGTGCAGGCACAGGTACAGC 117994
|| || || || |||| | || |||||||||||||
Sbjct 7778 ATGGCCTCAAGAATATTGACGCTCATCATGCACAGGTACAGC 7737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477500770406800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |