Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq5063 129 5e-25 seq2066 122 7e-23 seq4834 100 2e-16 seq471 91.5 1e-13 >seq5063 Length=4177 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | || |||||||| || || || || ||||| |||| | ||| | | | Sbjct 2222 ACGAAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCC 2281 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || || || ||||| ||||||||||| || ||||| |||||||| Sbjct 2282 ATCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTT 2341 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || || | || | ||||| || | ||| ||||| || |||| Sbjct 2342 GTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGAT 2401 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| |||||||| | ||| || ||||| || ||||| Sbjct 2402 CGTCTTGCCGGTGAGAGTCTTCACAAAGATTTGCAT 2437 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| || || || ||||| || | | || | | |||| || | |||| Sbjct 2611 TGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCGAGTTGC 2670 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||||||||| || ||||| ||||| || || || || || Sbjct 2671 TTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTG 2730 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||| ||||| || |||| ||| |||||||| Sbjct 2731 GCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTC 2790 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || || || || |||||| Sbjct 2791 AGGGTCTTCACGAAGATTTGCATG 2814 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| || | | ||| | ||| | ||||| || || || || || || ||||| ||| Sbjct 1665 TTTCCACCGCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCG 1724 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | || ||| | | || || | ||||| || ||||| |||| ||||| |||||||| Sbjct 1725 GAGAGAGTGCGCCCGTCTTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGT 1784 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || || || || || ||||| || || ||| |||| | ||||| || | ||| Sbjct 1785 GGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTTTCAATGGTGTCCGAGGCTTCG 1844 Query 101420 ACTTCAAGAGTGA 101432 ||||||||||||| Sbjct 1845 ACTTCAAGAGTGA 1857 >seq2066 Length=2850 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| || || ||||| || || || || || ||||| || | | ||| | | |||| || Sbjct 1 AACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 60 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||| || || || || | ||||||||||| || ||||||||||| || ||||| Sbjct 61 GAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCTTG 120 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| || || ||| | || | |||||||| | ||| ||||| ||||| | ||| || Sbjct 121 AATCTTCGCCTTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTTATCGTCTT 180 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| || || || || || || || ||||| Sbjct 181 GCCAGTCAAGGTCTTCACGAAGATTTGCAT 210 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| | ||| || || ||||| || || || || || ||||| || | Sbjct 1926 TTCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 1985 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | |||| || | |||||| || || || ||||||||||||||||| || | Sbjct 1986 ACAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGG 2045 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || || || || || || || | || | ||||| || | ||| | Sbjct 2046 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGA 2105 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||| || |||| ||| ||||| || || || || || || ||||||||| Sbjct 2106 CTTCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATG 2155 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| ||||| || ||||| || | | || | | |||| || | ||| Sbjct 1457 TGAAGAGTCGATTCCTTTTGGATGTTGTAGTCCGACAATGTGCGGCCATCCTCGAGCTGC 1516 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | ||||||||||| || ||||||||||| || || || || || Sbjct 1517 TTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 1576 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||| ||||| || |||| ||| ||||| || Sbjct 1577 GCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCCGTC 1636 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 || || || || || ||||||||| Sbjct 1637 AAGGTCTTCACGAAGATCTGCATG 1660 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 ||||||| ||||| |||| ||||| ||||||||||| || || || || || || || | Sbjct 2284 GCTTACCGGCAAAGATCAGGCGCTGCTGATCGGGCGGGATTCCCTCCTTGTCCTGGATCT 2343 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | || ||| | || | ||||| || | || || ||||| |||| || || |||| Sbjct 2344 TGGCCTTCACATTGTCGATGGTGTCGGAAGCCTCGACCTCAAGGGTGATGGTCTTCCCGG 2403 Query 101445 TTAAAGTTTTTACAAATATCTGCATGGTTACGCGA 101479 | | || || || || || ||||||||| || || Sbjct 2404 TGAGGGTCTTCACGAAGATTTGCATGGTTTCGAGA 2438 >seq4834 Length=88581 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || ||||| || || || || ||||| || | | ||| | | | || || Sbjct 21131 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTACGGCCGTCCTCA 21190 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || ||||| || | |||||||| ||||| || |||||||| ||||||||| Sbjct 21191 AGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGA 21250 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | ||| ||||| || |||| || || Sbjct 21251 ATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTCTTT 21310 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | || || ||||| || |||||| Sbjct 21311 CCGGTGAGCGTCTTGACAAAGATTTGCATG 21340 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || || || || || || || || ||||| |||| | || | | | Sbjct 22329 ACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGATAACGTGCGGCC 22388 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || || | ||||| || || || || | || || || || || || |||||||| || Sbjct 22389 GTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGAGGGATGCCTTCCTT 22448 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||| || || || | || | ||| || || | ||| |||||||| |||| Sbjct 22449 ATCTTGAATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCGACTTCAAGGGTGAT 22508 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || ||||| | || || || || ||||||||| Sbjct 22509 TGTCTTCCCGGTAAGCGTCTTCACGAAGATCTGCATG 22545 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || ||||| || || || || ||||| |||| | ||||||| |||| || Sbjct 21723 ACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAAAGTTCTGCCATCTTCA 21782 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | ||||| || || || || |||||||| ||||||||| Sbjct 21783 AGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGA 21842 Query 101381 AT 101382 || Sbjct 21843 AT 21844 >seq471 Length=2147 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 ||||||| ||||| |||| ||||||||||| || || || || || ||||| || |||| Sbjct 1948 GCTTACCGGCAAAGATCAGGCGCTGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATTT 2007 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | || ||| |||| | || || || | ||| ||||||||||||| || || || | Sbjct 2008 TGGCCTTCACATTTTCGATGGTATCCGAAGCTTCGACTTCAAGAGTGATGGTCTTTCCTG 2067 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 | | || || || || |||||||| Sbjct 2068 TGAGCGTCTTGACGAAGATCTGCAT 2092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396242129381070