Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq2257 188 8e-43 >seq2257 Length=8409 Score = 188 bits (208), Expect = 8e-43 Identities = 223/302 (74%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 40843 TCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATC 40902 || || ||||| ||||| ||| |||| | || | ||||||||| | || |||| Sbjct 5608 TCACAGCGTGCCGGTATCGGTATCAATGGTGGCCGCATTCGCGCCGTAGGCAGCGAAATT 5667 Query 40903 CGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCG 40962 ||||||||||||||| ||| || || | ||||||| || | ||| | ||| Sbjct 5668 CGTGGTGGTGAAGCACAACACACGGGTTGCCTGCCGTTCTTCAAGATGTTCCAGGCTGCG 5727 Query 40963 GTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATC 41022 || || ||||| || || ||||| || ||||||||||| |||||| ||| || || || Sbjct 5728 GTGAAGTCCTGCTCGCAAGGCGGCGTGCGTGGTGGTGCGGCAACCTTGTTCTACCCCATG 5787 Query 41023 TGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAAC 41082 ||||| || ||||| |||| ||| |||||||||| || |||||||| || ||||||||| Sbjct 5788 TGGCACCTGGAAGTGGAAACACTGCTGGTTCTGAAGAACAACCGTGGTGTGGAAGAAAAC 5847 Query 41083 CGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAGCGTTTAATC 41142 |||||||||||| |||| || || || ||| | ||| ||| |||| |||| | ||| Sbjct 5848 CGTATTCGTCACTTGGACTACGGTGTTCAGATCAACCGCTTGCTGTACCAGCGCCTGATC 5907 Query 41143 AA 41144 || Sbjct 5908 AA 5909 Score = 123 bits (136), Expect = 3e-23 Identities = 216/310 (70%), Gaps = 16/310 (5%) Strand=Plus/Plus Query 42946 GTTGCGCGATACGAAGAACAAAAGCATCGTGTGTTTGAAAATCTTACAGAAAAACAGTTA 43005 || || || ||||| | ||||| ||| | |||||||| || | ||||| ||||| Sbjct 7234 GTGGCTCGCTACGACCAGCAAAAATATCCGATTTTTGAAAAGCTGATTGAAAAGCAGTTG 7293 Query 43006 TCCTTCTTTTGGCGTCCAGAAGAAATTGAC-TTATCGATCGACCGTATGCAGTACGCGAA 43064 |||||||| |||||||| || ||| | ||| ||| | | ||||| || | || ||| Sbjct 7294 TCCTTCTTCTGGCGTCCGGAGGAAGTGGACATTACCCAG-GACCGGATCGACTATCAGAA 7352 Query 43065 AATGCCGGAACACGAAAAAATCATTTTCGATTCA--AACCTACAATATCAAACCCTGTTG 43122 |||| || |||||||| ||||||| ||| || || | ||||| ||| || || Sbjct 7353 CCTGCCTGACCACGAAAAGCACATTTTCA--TCAGCAATCTGAAGTATCAGACCTTGCTG 7410 Query 43123 GATACCATTCAGGGACGCGGCCCTAACCTGGCTTTCCTCCCT-----ATCGCTTCCGATG 43177 ||| |||| ||||| ||| |||| ||| |||| ||||| ||| |||| ||||| | Sbjct 7411 GATTCCATCCAGGGCCGCAGCCCCAACGTGGCCTTCCTGCCTTTGGTATCGATTCCGGAG 7470 Query 43178 TCTCAATGGAAACGTGGATCGAAACATGGGCGTTCAGTGAAACAACCCATAGCCGCAGTT 43237 ||||||| ||||| ||||| ||||| ||| || || | || ||| | Sbjct 7471 C-----TGGAAACCTGGATTGAAACCTGGGCTTTCTCCGAGACGATTCACTCGCGCTCGT 7525 Query 43238 ACACGCACAT 43247 |||||||||| Sbjct 7526 ACACGCACAT 7535 Score = 91.5 bits (100), Expect = 2e-13 Identities = 120/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 43486 CTGTATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATCCGCTTCTACGTGTCGTTT 43545 ||||| ||||| ||| ||||| ||| || || |||||||| ||||| ||| Sbjct 7738 CTGTACCTGTGCATGATGAGCGTCAATATTCTTGAGGCCATCCGCTTTTACGTCAGCTTT 7797 Query 43546 ACCTTCACGTTCAACTTTGCCGAACAAGGCAAG---ATGGAAGGTAACGCGAAGATCATG 43602 ||| | | ||| ||||||||| | ||||| |||||||| || || |||||||| Sbjct 7798 GCCTGCTCCTTCGCCTTTGCCGAGC---GCAAGCTGATGGAAGGCAATGCCAAGATCATT 7854 Query 43603 CGTCTGATTGCCCGTGATGAAGCACTTCATCAGAAAGGCACTCAA 43647 || ||||||| ||||||||||| || |||| || ||||| ||| Sbjct 7855 CGCTTGATTGCGCGTGATGAAGCGCTGCATCTGACTGGCACGCAA 7899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570036082838800