Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_019398.1
Length=178193
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 188 8e-43
>seq2257
Length=8409
Score = 188 bits (208), Expect = 8e-43
Identities = 223/302 (74%), Gaps = 0/302 (0%)
Strand=Plus/Plus
Query 40843 TCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATC 40902
|| || ||||| ||||| ||| |||| | || | ||||||||| | || ||||
Sbjct 5608 TCACAGCGTGCCGGTATCGGTATCAATGGTGGCCGCATTCGCGCCGTAGGCAGCGAAATT 5667
Query 40903 CGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCG 40962
||||||||||||||| ||| || || | ||||||| || | ||| | |||
Sbjct 5668 CGTGGTGGTGAAGCACAACACACGGGTTGCCTGCCGTTCTTCAAGATGTTCCAGGCTGCG 5727
Query 40963 GTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATC 41022
|| || ||||| || || ||||| || ||||||||||| |||||| ||| || || ||
Sbjct 5728 GTGAAGTCCTGCTCGCAAGGCGGCGTGCGTGGTGGTGCGGCAACCTTGTTCTACCCCATG 5787
Query 41023 TGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAAC 41082
||||| || ||||| |||| ||| |||||||||| || |||||||| || |||||||||
Sbjct 5788 TGGCACCTGGAAGTGGAAACACTGCTGGTTCTGAAGAACAACCGTGGTGTGGAAGAAAAC 5847
Query 41083 CGTATTCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAGCGTTTAATC 41142
|||||||||||| |||| || || || ||| | ||| ||| |||| |||| | |||
Sbjct 5848 CGTATTCGTCACTTGGACTACGGTGTTCAGATCAACCGCTTGCTGTACCAGCGCCTGATC 5907
Query 41143 AA 41144
||
Sbjct 5908 AA 5909
Score = 123 bits (136), Expect = 3e-23
Identities = 216/310 (70%), Gaps = 16/310 (5%)
Strand=Plus/Plus
Query 42946 GTTGCGCGATACGAAGAACAAAAGCATCGTGTGTTTGAAAATCTTACAGAAAAACAGTTA 43005
|| || || ||||| | ||||| ||| | |||||||| || | ||||| |||||
Sbjct 7234 GTGGCTCGCTACGACCAGCAAAAATATCCGATTTTTGAAAAGCTGATTGAAAAGCAGTTG 7293
Query 43006 TCCTTCTTTTGGCGTCCAGAAGAAATTGAC-TTATCGATCGACCGTATGCAGTACGCGAA 43064
|||||||| |||||||| || ||| | ||| ||| | | ||||| || | || |||
Sbjct 7294 TCCTTCTTCTGGCGTCCGGAGGAAGTGGACATTACCCAG-GACCGGATCGACTATCAGAA 7352
Query 43065 AATGCCGGAACACGAAAAAATCATTTTCGATTCA--AACCTACAATATCAAACCCTGTTG 43122
|||| || |||||||| ||||||| ||| || || | ||||| ||| || ||
Sbjct 7353 CCTGCCTGACCACGAAAAGCACATTTTCA--TCAGCAATCTGAAGTATCAGACCTTGCTG 7410
Query 43123 GATACCATTCAGGGACGCGGCCCTAACCTGGCTTTCCTCCCT-----ATCGCTTCCGATG 43177
||| |||| ||||| ||| |||| ||| |||| ||||| ||| |||| ||||| |
Sbjct 7411 GATTCCATCCAGGGCCGCAGCCCCAACGTGGCCTTCCTGCCTTTGGTATCGATTCCGGAG 7470
Query 43178 TCTCAATGGAAACGTGGATCGAAACATGGGCGTTCAGTGAAACAACCCATAGCCGCAGTT 43237
||||||| ||||| ||||| ||||| ||| || || | || ||| |
Sbjct 7471 C-----TGGAAACCTGGATTGAAACCTGGGCTTTCTCCGAGACGATTCACTCGCGCTCGT 7525
Query 43238 ACACGCACAT 43247
||||||||||
Sbjct 7526 ACACGCACAT 7535
Score = 91.5 bits (100), Expect = 2e-13
Identities = 120/165 (73%), Gaps = 6/165 (4%)
Strand=Plus/Plus
Query 43486 CTGTATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATCCGCTTCTACGTGTCGTTT 43545
||||| ||||| ||| ||||| ||| || || |||||||| ||||| |||
Sbjct 7738 CTGTACCTGTGCATGATGAGCGTCAATATTCTTGAGGCCATCCGCTTTTACGTCAGCTTT 7797
Query 43546 ACCTTCACGTTCAACTTTGCCGAACAAGGCAAG---ATGGAAGGTAACGCGAAGATCATG 43602
||| | | ||| ||||||||| | ||||| |||||||| || || ||||||||
Sbjct 7798 GCCTGCTCCTTCGCCTTTGCCGAGC---GCAAGCTGATGGAAGGCAATGCCAAGATCATT 7854
Query 43603 CGTCTGATTGCCCGTGATGAAGCACTTCATCAGAAAGGCACTCAA 43647
|| ||||||| ||||||||||| || |||| || ||||| |||
Sbjct 7855 CGCTTGATTGCGCGTGATGAAGCGCTGCATCTGACTGGCACGCAA 7899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570036082838800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |