Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7237 248 2e-60 seq2592 212 1e-49 >seq7237 Length=102105 Score = 248 bits (274), Expect = 2e-60 Identities = 641/969 (66%), Gaps = 22/969 (2%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||| |||||||| ||| || ||||| | | | ||| |||||||| || ||||| || Sbjct 84523 GTTGAGGGACTGGGACTGATCGATGAAGGCTCCTCGGTCCGCGGCCATCTCGATGATGTC 84582 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 |||| |||| |||||| ||||||||| ||| || | || |||| |||| Sbjct 84583 CTTCTGCGAGATCTCCCAAACGGTCTTGTAGAGGTCCTGCAGCTCCTTGGGGATCGAATC 84642 Query 212816 GATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAG 212875 ||||||||| | || || || ||| | | || || | |||| ||| || Sbjct 84643 GATGTTCTGGATCGATCCACTCTGTGAAATTATCTTGTTCTTCAGATTGTCGTCCCATAG 84702 Query 212876 GCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAG 212935 | | | | ||| ||| | || ||||| || || ||||||||||| || ||||| Sbjct 84703 GTTTCGCTCCACGAGGTCCTTCAGTAGATGAGGATTCACGATCTGGAAGTCGCCAGAGAG 84762 Query 212936 CACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAAT 212995 ||| | | ||| | ||| || ||||| ||||| || ||||||||| || || || Sbjct 84763 CACGCGGCGACTGTAGATGTTCGACGTGTACGGCTCCATCGACTCGTTGTTTCCTAGGAT 84822 Query 212996 CTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTC 213055 ||| || || || || |||||||| ||||||||||||||||||| || ||||||| Sbjct 84823 CTGCGCTGTCGATGCCGTTGGCATGGGCGCCACCAGGAGACTGTTCCGTACGCCGTGCTT 84882 Query 213056 GCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA--------TCTGCCAGACAGG---TCC 213104 |||| | || | ||||||||||| | || ||| || ||| Sbjct 84883 CGCGATCTTCTCCTTGAGTGCGGCCCAGTCCCACTGGTCGGTGGGCACGACCGGCTTTCC 84942 Query 213105 -TCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTG 213163 || || || |||||||| || |||||| ||| |||| |||||| || || | Sbjct 84943 ATCCTCGGTC---TTCCACATCTCGTACTGCAGGATTCCTTGGCTCACTGGCGATCCTTC 84999 Query 213164 GTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTA 213223 || | ||||| || |||| || ||||||||||| || || | |||||| |||| Sbjct 85000 ATAGGTCTCGTAGGTACCGTGCTGCTCCGCCAGCTCGCAAGAGGCTTCCAGGGCCGCGTG 85059 Query 213224 GTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGAC--GTGAAGGGC 213281 ||||||||| || || ||| | ||| | || ||| || ||||| |||||||| Sbjct 85060 GTAGATGGTCTCGAAGATCCTTCGGTTCATGTTGCGGGCTTC--GGGACTGGTGAAGGGG 85117 Query 213282 ATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGT 213341 |||| | ||| | || |||| |||||||| ||||| || || || | || Sbjct 85118 TAGCGCATGAGCATGAAGGCGTCCGCCAAGCCCTGGACTCCGATTCCAATCGGCCGATGC 85177 Query 213342 CTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTG 213401 ||| ||| || | | ||| || ||||| |||| ||||||||||||||| Sbjct 85178 CTCTTGTTGGAGGTCTCGGCCTCGGGCACAGGGTAGTAGTTCGCGTCGATGATCTTGTTC 85237 Query 213402 AGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCC 213461 ||||| | ||| || || |||| | | || | | ||| | | || | || | Sbjct 85238 AGGTTCCTCGTGATGACCTTCGTGATCTCGTGGAGCTTCGCGT-AGTCAA-AAGTCTTCT 85295 Query 213462 CCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGA 213521 || || || || |||||||| | |||||||||||| ||||| || || | | Sbjct 85296 CC-TCGGTGACGAAGCGGTTCAGGGCGACGGAGGCCAGGTTGCACACGGCTACTTCTTCA 85354 Query 213522 GAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTC 213581 | | ||||| | |||||||||||| |||||| ||| ||| || || |||||| Sbjct 85355 GGCGAAGAGTACTGGACGATCTCGGTGCAGAGGTTGGAGCACTTGATCGTCCCGAGGTTC 85414 Query 213582 TGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCT 213641 | ||||| ||||| |||| | ||||||||||||||||| || | ||||| || Sbjct 85415 TTCTGGTTGGACTTCTGGTTGCAGGCGTCCTTGTAGAGCATGTAAGGAGTGCCGGTTTCG 85474 Query 213642 AGCTGGGAC 213650 | ||| ||| Sbjct 85475 ATCTGCGAC 85483 Score = 131 bits (144), Expect = 3e-25 Identities = 288/424 (68%), Gaps = 16/424 (4%) Strand=Plus/Plus Query 213994 TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATAT 214053 ||||| ||| ||||| | || | || |||||||| |||||||| || || || Sbjct 85922 TGTTGTAGACCCGCAGCATAGGAATGAGTCCGTTGGAGGTGCCGTTGGTCCCAGCGATGA 85981 Query 214054 ACGAGCCGGAGGCCCTCAGGT--TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGA 214111 | |||||||| | | | || ||| ||| || || || |||||| ||||||| Sbjct 85982 GAGTTCCGGAGGCTCGAATGCAGTGGACATTGAGG--CCGATTCCGCCGGCGGACTTGGA 86039 Query 214112 GATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTT 214171 ||||| ||||| ||| | |||| | ||||||| | ||| ||| || | | | | Sbjct 86040 GATCAGAGCGCACTGCCAGAGGGTCTTGAAGATGCCGTCGATGGAGTCGTCACTCATGGT 86099 Query 214172 CAGCAAGAAGC---AGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGG 214228 |||| ||||| ||||| | ||||||| || | | ||| | |||||| ||||| || Sbjct 86100 GAGCAGGAAGCAGGAGCTC---ATCTGGGGCTTGCAGGTGCCGGCGTTGAAGAGCGTCGG 86156 Query 214229 GCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGAT 214288 ||||||| | | || | || | ||| ||||||| || | | | | | ||| Sbjct 86157 CGAGGCATGGGTGAACCACCGCTCGGACATGAGGTTGTAGGTTTCGATGGCGGCGTTGAT 86216 Query 214289 GTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGG 214347 ||| | ||||||||| | || ||| | ||||||||| || ||||| | || | Sbjct 86217 GTCTTCCTTGTGGATTCCGACGGC-CACGCGCATCAGCATATGTTGGGGTCGTTCCA--C 86273 Query 214348 GTCCTT--TGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGA 214405 | |||| | | |||||| ||||||||||||||||| |||||||| || ||||||| Sbjct 86274 GACCTTCCCGTCGATCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCGAAGTAGGT 86333 Query 214406 GTAG 214409 |||| Sbjct 86334 GTAG 86337 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 213780 GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACC 213839 |||||||||||| ||| ||| ||| || |||| | || |||||||| ||| |||| | Sbjct 85659 GGACACATGAGGGACCACTCCTTGTCGTCCTTGACACGCTCCATGAACAAGTCGGGGATC 85718 Query 213840 CACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGA 213899 || ||| || ||| || || | | | | ||| ||| ||| | ||| | |||| Sbjct 85719 CAGAGCCCGTAGAAGAGATCGCGAGCGCGCTCCTCCTCCGATCCGGTGTTCCTCTTCAGA 85778 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGG 213958 || || || ||||||||||||||||| ||||| ||||||||||| ||||| || || Sbjct 85779 CGCAGGAACTCGAAGATGTCCGCGTGCCATGGCTCGATGTAGATGGCGAAGGCTCCAGG 85837 >seq2592 Length=18905 Score = 212 bits (234), Expect = 1e-49 Identities = 301/423 (71%), Gaps = 3/423 (1%) Strand=Plus/Plus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 || ||||| || || |||||||| ||||| | ||||| ||| | ||||||||| || Sbjct 14874 AGTAGGTGGTCGGCCACGTACTCTATGTACTGGGACATTAGGCGGCAGTTCATGCCGATC 14933 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 | | |||||| | || | ||| || |||||| ||| ||||| ||||| || | | Sbjct 14934 ATGTCCACGGGTAGGGCTTCTGTCAGGTACTCCTGCTCGATCTGGACGGCCTCGCGGATG 14993 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 |||| || || | || ||| ||| | ||||| |||| || | | |||| Sbjct 14994 ATCTCGTTGACCTGCTTCTGGCTGGGCTTGCTCTCCAGGTACTTG---TACATGAGGCAG 15050 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || ||||| | ||| | ||||||||||||| |||||| ||||| | | ||| || Sbjct 15051 GCGAAGTCGCGGTGGAGGCCTTCGTCCCGGGAGATGAGTTCGTTGCTGTGGGTGAGGCCG 15110 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || ||||||||||| || || ||||| || || |||||||||||| Sbjct 15111 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAAGGATCCGGAGAAGAAGATG 15170 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || ||||| || ||||| ||| | | | |||||| || ||||||||||| |||| Sbjct 15171 CCTTCCACGGCGGCGAAGGCGATCACGCGGGTTCCGAAGGAGGCGTTCTTGTCGCCGATC 15230 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 ||| || |||||||| ||||||||||||||||| || | | | |||||| |||| Sbjct 15231 CAGCGCAGTGCCCAGTCGGCCTTCTTCTTGATGCACGGGAACTCTTGTATGGCGTTGAAG 15290 Query 48374 AGC 48376 ||| Sbjct 15291 AGC 15293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931445352358400