Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_019544.1
Length=49335
Score E
Sequences producing significant alignments: (Bits) Value
seq2290 143 8e-30
>seq2290
Length=1989
Score = 143 bits (158), Expect = 8e-30
Identities = 404/615 (66%), Gaps = 14/615 (2%)
Strand=Plus/Minus
Query 45488 AAAGAAGATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAAC 45547
|||| || || || || || ||||| ||||| || || | || ||||||| |
Sbjct 1420 AAAGGTGACCGCACAGGTACCGGCACGAACTCGGTATTTGGTCACCAAATGCGCTTCGAT 1361
Query 45548 TTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTAT 45607
|| | | || |||||| | | || || || ||| |||| | |||| ||| || |
Sbjct 1360 CTGTCGCAGGGTTTCCCGTTGATCACCACCAAGAAGCTGCACACCCGCAGCATCTTTATT 1301
Query 45608 GAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTG 45667
||| |||| |||||||| || || | ||||| |||| |||| ||| || ||
Sbjct 1300 GAATTGCTGTGGTTTTTGCGCGGTGAGTCCAATGTGCGCTGGCTGCAAGAGCGCGGCGTA 1241
Query 45668 ACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAA 45727
| || ||||| || |||||||| || ||||| |||| ||||| |||| |||| ||||
Sbjct 1240 TCCATCTGGGATGAATGGGCCGACGAGGACGGCAATCTGGGCCCGGTCTATGGCGTGCAA 1181
Query 45728 TGGCGGTCGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAG 45787
||||| || ||| | ||||| ||||||| || | | || | |
Sbjct 1180 TGGCGCTCCTGGCCGACCCCCGACGGTCGTCACATCGACCAGATCA-GCCAGTTGGT--G 1124
Query 45788 GAAATCAAGCGCAA----CCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGC 45843
||| | ||||| ||||| |||||| || || | || || |||||||||||
Sbjct 1123 GAACAGATTCGCAAGAATCCCGA-CTCGCGTCGCCTGATCGTCTCGGCCTGGAACGTGGC 1065
Query 45844 AAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTACGCC---TTTCAGTTTTACGTCGC 45900
| |||| | ||| ||||||| || | ||||| || ||||| || || ||
Sbjct 1064 GGATGTGGGCCAGATGGCTCTGCCCCCTTGCC---ACGCCCTGTTCCAGTTCTATGTAGC 1008
Query 45901 GAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCC 45960
||||| | |||| ||| | | ||||| || |||| || || || ||||
Sbjct 1007 CGATGGCAAGCTGTCCTGCCAGCTCTACCAGCGCAGTGCGGATATTTTCCTGGGTGTGCC 948
Query 45961 GTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGA 46020
|| || ||||| ||||| || ||| |||| || ||| | ||||| ||||| || || ||
Sbjct 947 CTTCAATATCGCCAGCTACGCTCTGCTGACCCACATGATGGCCCAGCAATGTGATCTGGA 888
Query 46021 TGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACA 46080
|| ||||| |||||| || ||||||||| ||| |||| || || | || ||
Sbjct 887 AGTGGGCGACTTCATTTGGACGGGCGGCGACTGCCACCTGTATTCCAACCACTTCGAGCA 828
Query 46081 AGCGAAACTGCAGCT 46095
||| || |||||||
Sbjct 827 AGCCGAATTGCAGCT 813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157736331622140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |