Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq2257 134 2e-26 >seq2257 Length=8409 Score = 134 bits (148), Expect = 2e-26 Identities = 204/288 (71%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 40583 TCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATC 40642 ||||| ||||| ||||| || | || | || | |||||||| | || |||| Sbjct 5608 TCACAGCGTGCCGGTATCGGTATCAATGGTGGCCGCATTCGCGCCGTAGGCAGCGAAATT 5667 Query 40643 CGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAACATATTCAAACC-GC 40701 |||||||||||||| || || ||| | || |||| || || ||| | | || Sbjct 5668 CGTGGTGGTGAAGCACAACACACGGGTTGCCTGCCGTTCTTCAAG-ATGTTCCAGGCTGC 5726 Query 40702 TGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTT 40761 || || ||||| || || || ||||| ||||||||||| ||||| ||| || || | Sbjct 5727 GGTGAAGTCCTGCTCGCAAGGCGGCGTGCGTGGTGGTGCGGCAACCTTGTTCTACCCCAT 5786 Query 40762 CTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAA 40821 ||||| |||||||| |||| || ||||| ||||||||||| || || |||||||| Sbjct 5787 GTGGCACCTGGAAGTGGAAACACTGCTGGTTCTGAAGAACAACCGTGGTGTGGAAGAAAA 5846 Query 40822 CCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATGTA 40869 ||| ||||||| | || || ||||| ||| | |||| ||| |||| Sbjct 5847 CCGTATTCGTCACTTGGACTACGGTGTTCAGATCAACCGCTTGCTGTA 5894 Score = 93.3 bits (102), Expect = 5e-14 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 42237 TTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATC 42296 |||| |||| |||| |||| ||| | || ||||||||||||||||| ||||| || Sbjct 7265 TTTTTGAAAAGCTGATTGAAAAGCAGTTGTCCTTCTTCTGGCGTCCGGAGGAAGTGGACA 7324 Query 42297 TGTCTACTGACCGTATGCAGTATGCAAAACTTCCTGAACATGAAAAAATCATTTTCGATT 42356 | | ||||| || | ||| || || ||||| || ||||| ||||||| Sbjct 7325 TTACCCAGGACCGGATCGACTATCAGAACCTGCCTGACCACGAAAAGCACATTTTCATCA 7384 Query 42357 CTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCAT 42416 || || ||||||| ||| || | ||| |||| ||||| || | || ||| | || | Sbjct 7385 GCAATCTGAAGTATCAGACCTTGCTGGATTCCATCCAGGGCCGCAGCCCCAACGTGGCCT 7444 Query 42417 TTTTGCCAATTGCATCCGAT--GTGAGCATGGAAACCTGGATCGAAACGTGGGCGTT 42471 | |||| | | || |||| |||| ||||||||||||| ||||| ||||| || Sbjct 7445 TCCTGCCTTTGGTAT-CGATTCCGGAGC-TGGAAACCTGGATTGAAACCTGGGCTTT 7499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557941218350800