Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_020080.1
Length=174413
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 134 2e-26
>seq2257
Length=8409
Score = 134 bits (148), Expect = 2e-26
Identities = 204/288 (71%), Gaps = 2/288 (1%)
Strand=Plus/Plus
Query 40583 TCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATC 40642
||||| ||||| ||||| || | || | || | |||||||| | || ||||
Sbjct 5608 TCACAGCGTGCCGGTATCGGTATCAATGGTGGCCGCATTCGCGCCGTAGGCAGCGAAATT 5667
Query 40643 CGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAACATATTCAAACC-GC 40701
|||||||||||||| || || ||| | || |||| || || ||| | | ||
Sbjct 5668 CGTGGTGGTGAAGCACAACACACGGGTTGCCTGCCGTTCTTCAAG-ATGTTCCAGGCTGC 5726
Query 40702 TGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTT 40761
|| || ||||| || || || ||||| ||||||||||| ||||| ||| || || |
Sbjct 5727 GGTGAAGTCCTGCTCGCAAGGCGGCGTGCGTGGTGGTGCGGCAACCTTGTTCTACCCCAT 5786
Query 40762 CTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAA 40821
||||| |||||||| |||| || ||||| ||||||||||| || || ||||||||
Sbjct 5787 GTGGCACCTGGAAGTGGAAACACTGCTGGTTCTGAAGAACAACCGTGGTGTGGAAGAAAA 5846
Query 40822 CCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATGTA 40869
||| ||||||| | || || ||||| ||| | |||| ||| ||||
Sbjct 5847 CCGTATTCGTCACTTGGACTACGGTGTTCAGATCAACCGCTTGCTGTA 5894
Score = 93.3 bits (102), Expect = 5e-14
Identities = 165/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 42237 TTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATC 42296
|||| |||| |||| |||| ||| | || ||||||||||||||||| ||||| ||
Sbjct 7265 TTTTTGAAAAGCTGATTGAAAAGCAGTTGTCCTTCTTCTGGCGTCCGGAGGAAGTGGACA 7324
Query 42297 TGTCTACTGACCGTATGCAGTATGCAAAACTTCCTGAACATGAAAAAATCATTTTCGATT 42356
| | ||||| || | ||| || || ||||| || ||||| |||||||
Sbjct 7325 TTACCCAGGACCGGATCGACTATCAGAACCTGCCTGACCACGAAAAGCACATTTTCATCA 7384
Query 42357 CTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCAT 42416
|| || ||||||| ||| || | ||| |||| ||||| || | || ||| | || |
Sbjct 7385 GCAATCTGAAGTATCAGACCTTGCTGGATTCCATCCAGGGCCGCAGCCCCAACGTGGCCT 7444
Query 42417 TTTTGCCAATTGCATCCGAT--GTGAGCATGGAAACCTGGATCGAAACGTGGGCGTT 42471
| |||| | | || |||| |||| ||||||||||||| ||||| ||||| ||
Sbjct 7445 TCCTGCCTTTGGTAT-CGATTCCGGAGC-TGGAAACCTGGATTGAAACCTGGGCTTT 7499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557941218350800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |