Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq4834 95.1 8e-14
seq2066 93.3 3e-13
seq5063 91.5 1e-12
seq48 91.5 1e-12
>seq4834
Length=88581
Score = 95.1 bits (104), Expect = 8e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||||||||| | ||| || ||| || || | || || || | | |||
Sbjct 21710 ACGAAGACGGAGTACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAAAGT 21769
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|||| ||||||||| |||||||| || ||||| || || || || |||||||| || ||
Sbjct 21770 TCTGCCATCTTCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCC 21829
Query 480671 TTCCTTGTCTTGAAT 480685
|||||| ||||||||
Sbjct 21830 TTCCTTATCTTGAAT 21844
Score = 86.0 bits (94), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| || || |||||||| || || || || ||||| || || ||||| || ||||||||
Sbjct 22390 TCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGAGGGATGCCTTCCTTA 22449
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
||||||||||| || || || |||||||| | | | ||||||||| ||
Sbjct 22450 TCTTGAATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCGACTTCAAGGGTGATT 22509
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || ||||| || ||||| ||||| || ||
Sbjct 22510 GTCTTCCCGGTAAGCGTCTTCACGAAGATCTG 22541
>seq2066
Length=2850
Score = 93.3 bits (102), Expect = 3e-13
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||| | | ||| || ||||||||||| || || || || || |||||||| || |||
Sbjct 44 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGA 103
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725
|| |||||||||||||||||||| |||||| ||||| || |||| | |
Sbjct 104 ATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATTCTCAATGGTGTCAGAAGCTTCGACT 163
Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || || || || | ||||| ||||| |||||
Sbjct 164 TCGAGAGTTATCGTCTTGCCAGTCAAGGTCTTCACGAAGATTTG 207
>seq5063
Length=4177
Score = 91.5 bits (100), Expect = 1e-12
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| || ||||||||||| || || || | ||| |||||||| || ||||||||||||||
Sbjct 2658 ATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTT 2717
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| || ||||| ||||| || || || || | | | ||| ||||| ||
Sbjct 2718 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGAT 2777
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || ||||| || ||||| ||||| |||||
Sbjct 2778 CGTCTTGCCGGTCAGGGTCTTCACGAAGATTTG 2810
Score = 89.7 bits (98), Expect = 3e-12
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||| | | ||| || ||||||||||| || || || | || |||||||| || |||
Sbjct 2271 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGA 2330
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725
|||||||| ||||| || ||||| ||||| || || || || | | | |
Sbjct 2331 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACT 2390
Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| ||||| || || || |||||||||||||| || || |||||
Sbjct 2391 TCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACAAAGATTTG 2434
>seq48
Length=185442
Score = 91.5 bits (100), Expect = 1e-12
Identities = 275/431 (64%), Gaps = 53/431 (12%)
Strand=Plus/Plus
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852
||||| |||||||| || || |||||||| ||| ||||||| |||||| | || || |
Sbjct 30203 AATCCAGATGAAGCAGTGGCTTATGGAGCCGCTATCCAAGCGGCTATTCTCTCTGG--AG 30260
Query 475853 TCAGACGAGAA-AC--TAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909
| ||| || || || | || | | | ||||| ||||| |||| ||||| | ||
Sbjct 30261 TTAGA-GATAAGACGGTCAAGGACGTACTTCTTGTCGACGTGGCTCCGCTTTCGCTTGGA 30319
Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969
| ||||||||||| | || ||||| ||| | || ||| | || || | || ||| |
Sbjct 30320 ATCGAAACAGTTGGTGCCATGATGACAAATATCATCGACCGCAACACGCGAATTCCAGCC 30379
Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACA------------------ 476011
|| |||| ||| | |||||||| ||||| ||| ||
Sbjct 30380 AAGGCTACAAAGACGTTTACTACTTATTCGGATAACCAACCAGGCGTCAGCATTCAGGTA 30439
Query 476012 ----------------ACTGT-----AACCA--------TCCAAATCTTTGAAGGTGAAA 476042
||||| ||||| |||| |||||||||| ||
Sbjct 30440 CCGTATTGATATGGTTACTGTGACAGAACCAAGTGTTGCTCCAGGTCTTTGAAGGGGAGC 30499
Query 476043 GAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTG 476102
| || ||| || || || ||||| || || || ||| | ||| || || ||||| |
Sbjct 30500 GCGCATGCACAAAGGACAACAACAAGCTGGGCACGTTTGACCTTATGGGAATCCCTCCGG 30559
Query 476103 CTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTA 476162
||||| | ||| | || |||||||| || ||||||||||| || || || || |||||
Sbjct 30560 CTCCCCGTGGAATCCCCCAAATTGAGGTCACTTTTGATATCGACGCCAACGGGATTCTAC 30619
Query 476163 ATGTTACTGCT 476173
|||| || |||
Sbjct 30620 ATGTCACGGCT 30630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267857059661480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |