Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4834 95.1 8e-14 seq2066 93.3 3e-13 seq5063 91.5 1e-12 seq48 91.5 1e-12 >seq4834 Length=88581 Score = 95.1 bits (104), Expect = 8e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||||||||| | ||| || ||| || || | || || || | | ||| Sbjct 21710 ACGAAGACGGAGTACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAAAGT 21769 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| ||||||||| |||||||| || ||||| || || || || |||||||| || || Sbjct 21770 TCTGCCATCTTCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCAGGAGGGATGCC 21829 Query 480671 TTCCTTGTCTTGAAT 480685 |||||| |||||||| Sbjct 21830 TTCCTTATCTTGAAT 21844 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || |||||||| || || || || ||||| || || ||||| || |||||||| Sbjct 22390 TCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGAGGGATGCCTTCCTTA 22449 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||||||||| || || || |||||||| | | | ||||||||| || Sbjct 22450 TCTTGAATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCGACTTCAAGGGTGATT 22509 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| ||||| || || Sbjct 22510 GTCTTCCCGGTAAGCGTCTTCACGAAGATCTG 22541 >seq2066 Length=2850 Score = 93.3 bits (102), Expect = 3e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| | | ||| || ||||||||||| || || || || || |||||||| || ||| Sbjct 44 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGA 103 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 || |||||||||||||||||||| |||||| ||||| || |||| | | Sbjct 104 ATGCCTTCCTTGTCTTGAATCTTCGCCTTGACATTCTCAATGGTGTCAGAAGCTTCGACT 163 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || || | ||||| ||||| ||||| Sbjct 164 TCGAGAGTTATCGTCTTGCCAGTCAAGGTCTTCACGAAGATTTG 207 >seq5063 Length=4177 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || ||||||||||| || || || | ||| |||||||| || |||||||||||||| Sbjct 2658 ATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTT 2717 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| ||||| || || || || | | | ||| ||||| || Sbjct 2718 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGAT 2777 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| ||||| ||||| Sbjct 2778 CGTCTTGCCGGTCAGGGTCTTCACGAAGATTTG 2810 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| | | ||| || ||||||||||| || || || | || |||||||| || ||| Sbjct 2271 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGA 2330 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT 480725 |||||||| ||||| || ||||| ||||| || || || || | | | | Sbjct 2331 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACT 2390 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || |||||||||||||| || || ||||| Sbjct 2391 TCGAGGGTGATCGTCTTGCCGGTGAGAGTCTTCACAAAGATTTG 2434 >seq48 Length=185442 Score = 91.5 bits (100), Expect = 1e-12 Identities = 275/431 (64%), Gaps = 53/431 (12%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| |||||||| || || |||||||| ||| ||||||| |||||| | || || | Sbjct 30203 AATCCAGATGAAGCAGTGGCTTATGGAGCCGCTATCCAAGCGGCTATTCTCTCTGG--AG 30260 Query 475853 TCAGACGAGAA-AC--TAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 | ||| || || || | || | | | ||||| ||||| |||| ||||| | || Sbjct 30261 TTAGA-GATAAGACGGTCAAGGACGTACTTCTTGTCGACGTGGCTCCGCTTTCGCTTGGA 30319 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 | ||||||||||| | || ||||| ||| | || ||| | || || | || ||| | Sbjct 30320 ATCGAAACAGTTGGTGCCATGATGACAAATATCATCGACCGCAACACGCGAATTCCAGCC 30379 Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACA------------------ 476011 || |||| ||| | |||||||| ||||| ||| || Sbjct 30380 AAGGCTACAAAGACGTTTACTACTTATTCGGATAACCAACCAGGCGTCAGCATTCAGGTA 30439 Query 476012 ----------------ACTGT-----AACCA--------TCCAAATCTTTGAAGGTGAAA 476042 ||||| ||||| |||| |||||||||| || Sbjct 30440 CCGTATTGATATGGTTACTGTGACAGAACCAAGTGTTGCTCCAGGTCTTTGAAGGGGAGC 30499 Query 476043 GAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTG 476102 | || ||| || || || ||||| || || || ||| | ||| || || ||||| | Sbjct 30500 GCGCATGCACAAAGGACAACAACAAGCTGGGCACGTTTGACCTTATGGGAATCCCTCCGG 30559 Query 476103 CTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTA 476162 ||||| | ||| | || |||||||| || ||||||||||| || || || || ||||| Sbjct 30560 CTCCCCGTGGAATCCCCCAAATTGAGGTCACTTTTGATATCGACGCCAACGGGATTCTAC 30619 Query 476163 ATGTTACTGCT 476173 |||| || ||| Sbjct 30620 ATGTCACGGCT 30630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267857059661480