Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_020201.1
Length=142349
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 194 2e-44
>seq2257
Length=8409
Score = 194 bits (214), Expect = 2e-44
Identities = 207/271 (76%), Gaps = 2/271 (1%)
Strand=Plus/Minus
Query 76460 GAACGCCCAAGTCTCTACCCATGTTTCCAGGGT-GGTGTCGGATACGATCGGCAGAAGAA 76518
||| ||||| || || | ||| |||||||| || ||| |||| | ||||| |
Sbjct 7500 GAAAGCCCAGGTTTCAATCCAGGTTTCCAGCTCCGGAATCG-ATACCAAAGGCAGGAAGG 7442
Query 76519 CTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTTGCTGA 76578
| |||| || | |||||||| | |||||||| | | |||| |||||||| |||||||
Sbjct 7441 CCACGTTGGGGCTGCGGCCCTGGATGGAATCCAGCAAGGTCTGATACTTCAGATTGCTGA 7382
Query 76579 TGAAGATGTGCTTCTCGTGATCCGGCAGGTTCATGTAGTCGATTCGGTCACGGGTCACGT 76638
|||| |||||||| ||||| || ||||||||| |||||||| ||||| |||| | ||
Sbjct 7381 TGAAAATGTGCTTTTCGTGGTCAGGCAGGTTCTGATAGTCGATCCGGTCCTGGGTAATGT 7322
Query 76639 TAACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAACTTCG 76698
||||| || || ||||||||||| | || ||||||||||||||||| || || |||
Sbjct 7321 CCACTTCCTCCGGACGCCAGAAGAAGGACAACTGCTTTTCAATCAGCTTTTCAAAAATCG 7262
Query 76699 CATGTTTCTGCTGGTCGTAGCGAGAAACGTT 76729
|| ||| |||||||||||||||| |||||
Sbjct 7261 GATATTTTTGCTGGTCGTAGCGAGCCACGTT 7231
Score = 109 bits (120), Expect = 5e-19
Identities = 210/310 (68%), Gaps = 0/310 (0%)
Strand=Plus/Minus
Query 77753 GGATTTCTTGAAGGAAATCGCATCACGAGGGGGCTCGAATCCGTTGGTGGAGTTGGTGAT 77812
||| | ||||| ||| | | | |||| || ||||| | || ||||||| |||| ||
Sbjct 6804 GGACTGCTTGACGGATACCAGACCACGCGGAGGCTCAATACCATTGGTGGCATTGGCAAT 6745
Query 77813 TTGGCTGGATGTCTCGCAAGGCATCATCGTGGACAGCGTGGAGTTACGCAGGCCATGAAT 77872
|||||||| || || ||||||||| | || ||| || ||||| ||||| || || |
Sbjct 6744 CTGGCTGGAGGTTTCCGAAGGCATCAAGGCGGTCAGGGTCGAGTTGCGCAGACCGTGCTT 6685
Query 77873 GGCGATGTCGATACGCAGCTTTTCCCAATCCATCTTCAGTTCCGCAGTGTGGAGTCCATC 77932
| |||| || |||||| ||||||||||| | ||| | | || || || ||
Sbjct 6684 GACGATATCAGCACGCAGGGCTTCCCAATCCAGGTGCAGCGGCTCGTTGCAGATACCGTC 6625
Query 77933 CACTTCTTTCTTGTAACGGTCGATCGGTAGAATACCCTGAGAGTAGGTGGTCTCGTGGAA 77992
||| ||||||||||| |||| | || || | ||| | ||| || || || | |||
Sbjct 6624 CACATCTTTCTTGTAGGTGTCGGTAGGCAGCAAACCAGCGGCGTACGTCGTTTCATCGAA 6565
Query 77993 GAGATCACATTTACCCAGTTCTTTTGCCAGGTCAACCGATGCTTCCAGCAGGTAATACTG 78052
| ||| || ||| ||| | || | ||||| || | || |||||| |||||
Sbjct 6564 GGCATCGCAAGGACCGTATTCGCGCGACAACTGCACCGAAGCCTTCAACAGGTAGTACTG 6505
Query 78053 GAATGCTTCA 78062
|| ||||||
Sbjct 6504 GATGGCTTCA 6495
Score = 104 bits (114), Expect = 2e-17
Identities = 120/162 (74%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 75129 TGGGTGCCGGACAAATGCAAGGCTTCATCACGAGCAATCAGTTCGATAATGTTGGTGTTG 75188
|| ||||| | || ||||| ||||||||||| ||||||| || || |||| |||
Sbjct 7898 TGCGTGCCAGTCAGATGCAGCGCTTCATCACGCGCAATCAAGCGAATGATCTTGGCATTG 7839
Query 75189 CCCAGCATTACCCCGCGCTCACCGAAGGCGAAGGAGCAGGCAAAGCTCACGTAGAAGCGG 75248
|| ||| | | |||||| | ||||||||||||||||||||||| ||||| ||||||
Sbjct 7838 CCTTCCATCAGCTTGCGCTCGGCAAAGGCGAAGGAGCAGGCAAAGCTGACGTAAAAGCGG 7779
Query 75249 ATCGCTTCCAGTGCGTTGATGTTGTGAAGGCACAGGTACAGC 75290
|| || || || |||| | | | |||||||||||||
Sbjct 7778 ATGGCCTCAAGAATATTGACGCTCATCATGCACAGGTACAGC 7737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 455346050376400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |