Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_021073.1
Length=107218
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 351 7e-92
>seq2257
Length=8409
Score = 351 bits (388), Expect = 7e-92
Identities = 615/889 (69%), Gaps = 10/889 (1%)
Strand=Plus/Plus
Query 9245 ATCTCCCTCCCGACACCAATCATGTCTGGTGTTCGTACACCGACCCGCCAATTCAGCTCA 9304
|| ||| | || || || |||||| |||| || || ||||| || ||||| ||||||||
Sbjct 5476 ATTTCCTTGCCCACGCCCATCATGGCTGGCGTGCGCACACCCACTCGCCAGTTCAGCTCT 5535
Query 9305 TGCGTAAAAATCGAAAGCGGTGATAGCCTAAAATCAATCAATGCAACATCAGGCGCAATC 9364
||||| |||||| | | || ||||| | |||||||| || | |||| ||
Sbjct 5536 TGCGTGCTGATCGAATGTGACGACAGCCTGGACAGCATCAATGCCACGACCAGCGCCATT 5595
Query 9365 GTGAGTTACGTTTCACAGCGTGCAGGTATTGGCATTAACGCGGGTCGTATCCGAGCATTA 9424
|| ||||||| ||||||||||| ||||| || || || | || || || || || ||
Sbjct 5596 GTTCGTTACGTGTCACAGCGTGCCGGTATCGGTATCAATGGTGGCCGCATTCGCGCCGTA 5655
Query 9425 GGTTCTGAGATTCGTGGTGGTGAAGCGGTACATACTGGTTGTATCCCATTCTACAAACAC 9484
|| || ||||||||||||||||| ||| || ||||| | || |||| |||
Sbjct 5656 GGCAGCGAAATTCGTGGTGGTGAAGCACAACACACGGGTTGCCTGCCGTTCTTCAAGATG 5715
Query 9485 TTCCAAACAGCAGTGAAATGTTGTAGCCAAGGCGGTGTTCGTGGCGGCGCGGCAACGGTA 9544
||||| | || ||||| | || |||||||| || ||||| || |||||||| |
Sbjct 5716 TTCCAGGCTGCGGTGAAGTCCTGCTCGCAAGGCGGCGTGCGTGGTGGTGCGGCAACCTTG 5775
Query 9545 TTCTACCCAATGTGGCACCTAG-AGTACAAATCACTAATCGTACTCAAGAACAACCGTGG 9603
|||||||| ||||||||||| | ||| ||| |||| | || || ||||||||||||||
Sbjct 5776 TTCTACCCCATGTGGCACCTGGAAGTGGAAA-CACTGCTGGTTCTGAAGAACAACCGTGG 5834
Query 9604 TATCGAAGAAAACCGTGTACGTCATATGGACTACGGTGTACAAATTAATGGCCTGATGTA 9663
| | |||||||||||| | ||||| ||||||||||||| || || || || || ||||
Sbjct 5835 TGTGGAAGAAAACCGTATTCGTCACTTGGACTACGGTGTTCAGATCAACCGCTTGCTGTA 5894
Query 9664 TAAGCGTCTGCTGTCTGGTCAG-AACATCACTTTATTCTCACCTCATAGTGTACCGGGTC 9722
|||| ||| | || ||| | ||||| | ||||| || || || || || |
Sbjct 5895 CCAGCGCCTGAT-CAAGGGCAGCCATATCACGCTGTTCTCGCCGCACGACGTGCCCGGCC 5953
Query 9723 TATACGATGCATACTTCGAAGACCAAGATAAGTTCGAGCGACTGTACACCAAAGCGGAAT 9782
| ||||| || | ||| | ||||| || |||||||||| |||||| | ||
Sbjct 5954 TGTACGAAGCCTTCTTTGCCGACCAGGACGAGTTCGAGCGTCTGTACGAAATGTACGAGC 6013
Query 9783 CTGATCCATCAATCGAAAAAGACACAATCTCTGCTAAGGAAGCATTCAGCATACTAATGC 9842
||||| | ||| || || | | || ||| ||| | | || ||||
Sbjct 6014 AGGATCCTGCCATCCGCAAGCGCAGCCTGCCAGCCGTGGAGCTGTTCTCCTTGCTGATGC 6073
Query 9843 AAGAGCGTGCTTCTACAGGTCGCATCTACATTCAGCACGTAGATCACTGTAACATTAACG 9902
|||||||||| || || || |||||||||||| |||| || || || |||| ||
Sbjct 6074 AAGAGCGTGCCAGCACCGGCCGTATCTACATTCAGAACGTGGACCATTGCAACACGCACA 6133
Query 9903 GTCCTTTC---GATGAGCGCGTTGCACCAGTACGCCAATCAAACCTATGTATGGAAATCG 9959
| || ||| | ||| ||| || || || ||||| || ||||| || ||||||||||
Sbjct 6134 GCCCATTCCAGGCTGACCGC---GCTCCTGTGCGCCAGTCCAACCTGTGCATGGAAATCG 6190
Query 9960 CACTACCAACCAAACCGTTGAATAACGTCGATGATCCTGATGGTGAAGTTGCGCTATGTA 10019
| || || ||||| || ||||| | | | |||||||| |||||| | ||||| || |
Sbjct 6191 CTCTGCCTACCAAGCCTTTGAACGATCTGAACGATCCTGAAGGTGAAATCGCGCTGTGCA 6250
Query 10020 CTCTATCTGCATTCAACTTGGGTAAGATTGAATCGGTTGGTGATTTTGAGCGTCTGTCTC 10079
| || || || |||||| ||||| | || || | | || | || ||||| ||
Sbjct 6251 CGCTGTCGGCTTTCAACCTGGGTGCTCTGGAGTCCCTGGACGAGCTGGACGGTCTGGCTG 6310
Query 10080 GTATCGTTGTGCGTGCATTGGATAATCTGTTAGACTACCAAAACTACCC 10128
| |||| ||||| ||||| |||| | |||||||| |||||||
Sbjct 6311 AACTGATTGTTCGTGCTCTGGATGCTCTGCTGGACTACCAGGACTACCC 6359
Score = 311 bits (344), Expect = 6e-80
Identities = 822/1245 (66%), Gaps = 64/1245 (5%)
Strand=Plus/Plus
Query 10437 TGCGTAATGAGATTGTCCATAATGGCCTACGTAACTCTACTCTATCTGCATTCATGCCTT 10496
||||| ||| || ||| | | || || || ||||| || || | || || |||||||
Sbjct 6668 TGCGTGCTGATATCGTCAAGCACGGTCTGCGCAACTCGACCCTGACCGCCTTGATGCCTT 6727
Query 10497 CGGAAACATCTTCTCAGGTATCTAACGCAACAAACGGCATCGAACCACCTCGTGGCTACA 10556
||||||| || ||| | | || || || || || || || || || |||||
Sbjct 6728 CGGAAACCTCCAGCCAGATTGCCAATGCCACCAATGGTATTGAGCCTCCGCGTGGTCTGG 6787
Query 10557 TGTCAGTTAAGCAGTCGAAGGATGGCATCTTAAAACAAATCGTACCGGGTTATGATAAAT 10616
| || || |||||||| ||||| || ||||| || | || || | | ||| ||||
Sbjct 6788 TATCCGTCAAGCAGTCCAAGGACGGTATCTTGCGTCAGGTGGTGCCTGAATTTGAAAAAT 6847
Query 10617 ACAAAGACCAATACGAGTTACTATGGAATATCAAAGACAACACTGGTTACTTGGAATTGG 10676
| || || || ||||| || || ||| | || | |||| | ||| || | ||||
Sbjct 6848 ATAAGGATCAGTACGAATTGCTGTGGCAAATGCCCGGCAACGACGACTACCTGAAGTTGG 6907
Query 10677 TTGCCATCATGCAGAAGTTTGTGGATCAGGCTATTTCAGCAAACACTAACTACGACCCAG 10736
||| | | ||||||||||| || || ||| | || || || ||||| ||||| ||||||
Sbjct 6908 TTGGCGTGATGCAGAAGTTCGTTGACCAGTCGATCTCTGCGAACACCAACTATGACCCAC 6967
Query 10737 AAAACTACCCAGAAAGTAAGGTTCCAATCAAAAAGTTATTGCAAGATTTGGTGACATGTT 10796
| | | | || || || || || | | | | || || || |
Sbjct 6968 AGCGGTTCGAGGGTGGTCGCGTACCGATGAAGCAACTGCTCAAGGACCTGCTGCTGGCCT 7027
Query 10797 ATAGACTCGGCATCAAGACACTGTACTACCACAACACACGAGATGGTGCTAGTGATGAAC 10856
| | | ||| | ||||| |||||||||||||||| || || ||||| |||| |
Sbjct 7028 ACAAATACGGTGTGAAGACCTTGTACTACCACAACACCCGCGACGGTGCCGATGATTCGC 7087
Query 10857 A----GAA--AGAAGACGATGGTGGCTGCGATGGTGGTGGCTGCAAAATTTAAGGA---G 10907
| ||| ||| ||||| ||| |||| || || | ||||| || |||| | |
Sbjct 7088 ATGGCGAAGTAGAGGACGACGGT---TGCGCAGGCGGCGCGTGCAAGATCTAAGCAAGGG 7144
Query 10908 T------CATGATGAAT---TATTCAGTATTTAACC--AAACAAAAAACGACCAACTGAA 10956
| ||| |||| | ||| |||| || | |||| | |||||||| || ||
Sbjct 7145 TAAAGAGCATCATGACTACCTAT--AGTACTTTTTCTAAAACGGATAACGACCAGCTCAA 7202
Query 10957 GGAGCCGATGTTCTTCGGCCAATCAGTTAACGTATCCCGTTACGACCAACAGAAACATGA 11016
|| || |||||||| || || | |||||||| | || |||||||| || ||| ||
Sbjct 7203 AGAACCCATGTTCTTTGGGCAGCCGGTTAACGTGGCTCGCTACGACCAGCAAAAATATCC 7262
Query 11017 TGTTTTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTGGCGTCCCGAAGAAGTTGA 11076
||||||| || || | | | ||||| | || |||||||||||||| || ||||| ||
Sbjct 7263 GATTTTTGAAAAGCTGATTGAAAAGCAGTTGTCCTTCTTCTGGCGTCCGGAGGAAGTGGA 7322
Query 11077 TGTGTCACAAGACCGAATCGACTA-CAGTAAAATGACTGATGCGGAGAAACACATCTTCA 11135
| | || ||||| |||||||| ||| || || |||| || || ||||| ||||
Sbjct 7323 CATTACCCAGGACCGGATCGACTATCAG-AACCTGCCTGACCACGAAAAGCACATTTTCA 7381
Query 11136 TTAGTAACCTGAAGTACCAAACATTACTCGACTCGATCCAAGGCCGTAGCCCGAATATGG 11195
| || || |||||||| || || || || || || ||||| ||||| ||||| || |||
Sbjct 7382 TCAGCAATCTGAAGTATCAGACCTTGCTGGATTCCATCCAGGGCCGCAGCCCCAACGTGG 7441
Query 11196 CGTTCCTGCCTATTGTGTCACTACCAGAAGTCGAAACTTGGGTAGAAACGTGGAGCTTCA 11255
| ||||||||| | || || | || || | ||||| ||| | ||||| ||| |||
Sbjct 7442 CCTTCCTGCCTTTGGTATCGATTCCGGAGCTGGAAACCTGGATTGAAACCTGGGCTTTCT 7501
Query 11256 GCGAAACCATCCACTCTCGTTCATACACACACATCATTCGCAATATTGTCAATGACCCTA 11315
||| || || ||||| || || ||||| ||||||||||||||||||| |||||||||
Sbjct 7502 CCGAGACGATTCACTCGCGCTCGTACACGCACATCATTCGCAATATTGCCAATGACCCGT 7561
Query 11316 GTATTGTGTTCGATGATGTTGTTGAGAATAAGCACATCCTAGAGCGAGCTAAAGATA-TT 11374
|| | || || || | || || || |||| | ||| || || | ||
Sbjct 7562 CCGTTATTTTTGACGACATCGTGCGCAACGAGAACATTCAGCTGCGTGCCGCCGACATTT 7621
Query 11375 GCTCGTTACTACGACGATCTCATCTTGG----CATGC--------------------AAA 11410
|||| |||||||||||||| ||| | |||||
Sbjct 7622 CCTCG-TACTACGACGATCTGATCAGCGACACCATGCTGTACGCCCAGCTGGGTGCAGGC 7680
Query 11411 GAGCATGAGCTAAACGG-CAAAC----ACACAATGCG----CGACCTAAAGAAAAAGTTG 11461
|| || || | ||||| |||| || | | ||| ||| || ||||| ||| ||
Sbjct 7681 GAACACGAAATCAACGGTGAAACCCGTACGCTAAGCGTCTACGAGCTGAAGAAGAAGCTG 7740
Query 11462 TACTTGTGCATGATGGCTGTTAATGTATTAGAAGCAGTTCGTTTCTACGTTAGTTTCGCT 11521
||| ||||||||||| || ||| | | || || | || || ||||| || || ||
Sbjct 7741 TACCTGTGCATGATGAGCGTCAATATTCTTGAGGCCATCCGCTTTTACGTCAGCTTTGCC 7800
Query 11522 TGTTCATTTGCATTCGCTGAACGCGAGATTATGGAAGGTAATGCTAAAATCATCAAGCTT 11581
|| || || || || || || ||| || | |||||||| ||||| || ||||| ||||
Sbjct 7801 TGCTCCTTCGCCTTTGCCGAGCGCAAGCTGATGGAAGGCAATGCCAAGATCAT-TCGCTT 7859
Query 11582 -ATTGCTCGTGATGAAGCACTACACCAAAGCGGTACACAGCACAT 11625
||||| ||||||||||| || || | | || || || |||||
Sbjct 7860 GATTGCGCGTGATGAAGCGCTGCATCTGACTGGCACGCAACACAT 7904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 342941408342690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |