Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5063 102 1e-16 seq471 102 1e-16 seq4834 89.7 9e-13 >seq5063 Length=4177 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| ||||| || | |||| ||| || || || |||||||| | || | | Sbjct 2223 CGAAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCA 2282 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| |||||||| || || || | ||||||||| || || ||||||||||| Sbjct 2283 TCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTG 2342 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | || || || ||||| | || ||||| || || || Sbjct 2343 TCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATC 2402 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || ||||| ||||||||| Sbjct 2403 GTCTTGCCGGTGAGAGTCTTCACAAAGATTTGCATT 2438 >seq471 Length=2147 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || |||||||| || | | |||||||||||| || ||||| || ||||| || |||||| Sbjct 1950 TTACCGGCAAAGATCAGGCGCTGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATTTTG 2009 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | || | |||| || ||||| |||| || ||||| ||||| || || || ||||| Sbjct 2010 GCCTTCACATTTTCGATGGTATCCGAAGCTTCGACTTCAAGAGTGATGGTCTTTCCTGTG 2069 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || |||||| Sbjct 2070 AGCGTCTTGACGAAGATCTGCATT 2093 >seq4834 Length=88581 Score = 89.7 bits (98), Expect = 9e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| || ||||| | | || || |||| || | |||| ||| || ||| || || Sbjct 21106 TTAAATTCCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTA 21165 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 ||| || | || | || || | |||||||||||||| || | | |||||| || Sbjct 21166 GTCTGAAAGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTC 21225 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 ||||| || ||||| |||||||| || || | || | || || || || |||| Sbjct 21226 GGGAGGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGC 21285 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || || || ||||| || ||||| |||||||| Sbjct 21286 TTCGACTTCGAGGGTGATGGTCTTTCCGGTGAGCGTCTTGACAAAGATTTGCAT 21339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899569944943200