Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq2872 187 8e-43 seq5543 147 7e-31 >seq2872 Length=1900 Score = 187 bits (206), Expect = 8e-43 Identities = 210/279 (75%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 40467 ACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCA 40524 ||||||| |||||| | | |||| || ||| |||||||| ||||| ||||||| Sbjct 412 ACGTACTCGATCACGCGGTCGCGAC--CGTCCATGCAGAAGTCGACGTCGAAGTCGGGCA 469 Query 40525 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGA 40584 | || || || || ||||| ||||| || ||||| | || ||| |||||||||||| Sbjct 470 TCGAGACCCGTTCAGGGTTGAGGAAACGTTCGAACAGCAGGTCGTAGGCCAGCGGGTCGA 529 Query 40585 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40644 ||||||||||| || |||||||| |||||||| ||||| | || || || || || | Sbjct 530 GGTCGGTGATCTTCAGCACGTAGGCCACCAGCGAGCCGGCACCCGACCCCCGGCCCGGAC 589 Query 40645 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40704 | ||| |||||||| | ||| ||||| |||||||||| |||| |||||||| Sbjct 590 CTACCGGCACGCCGTTGTTCTTGGCCCACTTGATGAAGTCCATAACGATCAGGAAGTAAC 649 Query 40705 ACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 40743 |||||||||||||||||||| ||||| | |||| ||| Sbjct 650 CGGGGAAGCCCATCTGGATGATGATGTCCAGCTCGAACT 688 >seq5543 Length=16390 Score = 147 bits (162), Expect = 7e-31 Identities = 169/225 (75%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 40503 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40562 ||||| | ||| | || ||||||||||||||||||||||||||||| || ||||| | Sbjct 8850 AAGTCCACGTCAAAGTCAGGCATGGACACGCGCTCGGGGTTCAGGAAACGTTCGAACAGC 8909 Query 40563 A-GTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 | ||| || | || ||||| |||||||| ||||| | | |||||| ||||| ||||| Sbjct 8910 AAGTCATAGCGCAAG-GGGTCCAGGTCGGTAATCCCCATGCTGTAGGCCACCAGGGAACC 8968 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 || | |||||||| || || || || ||||| || | ||| ||||| ||||| Sbjct 8969 CGCACCCGAGCCTCGGCCTGGTCCTACGGGCACGCCATTGTGCTTGCCCCAGTTAATGAA 9028 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGAT 40726 |||||| |||| |||||||| |||||| ||||| |||||| Sbjct 9029 GTCCGCCACGATCAGGAAGTAGCCCGGGAACCCCATGGAGATGAT 9073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163870184548680