Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq2872 179 1e-40 seq5543 138 4e-28 >seq2872 Length=1900 Score = 179 bits (198), Expect = 1e-40 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||| ||||| |||||||| || || || || ||||| ||||| || ||||| | Sbjct 447 GAAGTCGACGTCGAAGTCGGGCATCGAGACCCGTTCAGGGTTGAGGAAACGTTCGAACAG 506 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || ||| ||||||||||||||||||||||| || |||||||| |||||||| || Sbjct 507 CAGGTCGTAGGCCAGCGGGTCGAGGTCGGTGATCTTCAGCACGTAGGCCACCAGCGAGCC 566 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | || ||||| || || || ||| || ||||| | ||| ||||| |||||| Sbjct 567 GGCACCCGACCCCCGGCCCGGACCTACCGGCACGCCGTTGTTCTTGGCCCACTTGATGAA 626 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCGTA 40489 |||| |||| |||||||| ||||| |||||||||||||| ||||| | |||| | Sbjct 627 GTCCATAACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATGTCCAGCTCGAA 686 Query 40490 CT 40491 || Sbjct 687 CT 688 >seq5543 Length=16390 Score = 138 bits (152), Expect = 4e-28 Identities = 167/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 40251 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATG 40310 ||||| | ||| | || ||||||||||||||||||||||||||||| || ||||| | Sbjct 8850 AAGTCCACGTCAAAGTCAGGCATGGACACGCGCTCGGGGTTCAGGAAACGTTCGAACAGC 8909 Query 40311 AGCCCGT-GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 | | | || | || ||||| |||||||| ||||| | | |||||| ||||| ||||| Sbjct 8910 AAGTCATAGCGCAAG-GGGTCCAGGTCGGTAATCCCCATGCTGTAGGCCACCAGGGAACC 8968 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 || | ||||| || || || || || || || || | ||| ||||| ||||| Sbjct 8969 CGCACCCGAGCCTCGGCCTGGTCCTACGGGCACGCCATTGTGCTTGCCCCAGTTAATGAA 9028 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGAT 40474 |||||| |||| |||||||| |||||||||||| |||||| Sbjct 9029 GTCCGCCACGATCAGGAAGTAGCCCGGGAACCCCATGGAGATGAT 9073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163310234490180