Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_021344.2
Length=176227
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 179 4e-40
>seq2257
Length=8409
Score = 179 bits (198), Expect = 4e-40
Identities = 295/423 (70%), Gaps = 2/423 (0%)
Strand=Plus/Plus
Query 41642 AAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCC 41701
||| | || || || ||||| || |||||||| ||||| || || || || ||||| |
Sbjct 5473 AAGATTTCCTTGCCCACGCCCATCATGGCTGGCGTGCGCACACCCACTCGCCAGTTCAGC 5532
Query 41702 AGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCG 41761
|||||| |||| |||| | || |||| | ||||| ||| ||
Sbjct 5533 TCTTGCGTGCTGATCGAATGTGACGACAGCCTGGACAGCATCAATGCCACGACCAGCGCC 5592
Query 41762 ATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCG 41821
|| || || | ||||| ||||| ||||||||| | || | || | ||||||||
Sbjct 5593 ATTGTTCGTTACGTGTCACAGCGTGCCGGTATCGGTATCAATGGTGGCCGCATTCGCGCC 5652
Query 41822 ATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAA 41881
| || |||| ||||||||||||||| || || || | ||||||| ||
Sbjct 5653 GTAGGCAGCGAAATTCGTGGTGGTGAAGCACAACACACGGGTTGCCTGCCGTTCTTCAAG 5712
Query 41882 CATATTC-AGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAAC 41940
|| ||| || | ||||| || ||||| || ||||| || || ||||||||||| |||||
Sbjct 5713 -ATGTTCCAGGCTGCGGTGAAGTCCTGCTCGCAAGGCGGCGTGCGTGGTGGTGCGGCAAC 5771
Query 41941 GTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAA 42000
|||| || || || ||||| ||||||| |||| |||||||||||||| ||||||
Sbjct 5772 CTTGTTCTACCCCATGTGGCACCTGGAAGTGGAAACACTGCTGGTTCTGAAGAACAACCG 5831
Query 42001 AGGTGTTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGAT 42060
||||| ||| | |||||||| |||||| |||| || || || ||| | ||| ||| |
Sbjct 5832 TGGTGTGGAAGAAAACCGTATTCGTCACTTGGACTACGGTGTTCAGATCAACCGCTTGCT 5891
Query 42061 GTA 42063
|||
Sbjct 5892 GTA 5894
Score = 122 bits (134), Expect = 1e-22
Identities = 192/272 (71%), Gaps = 6/272 (2%)
Strand=Plus/Plus
Query 43427 TTTGAAAAGCTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTG 43486
||||||||||||| |||||| || |||| ||||||||||| ||||| |||||||| |
Sbjct 7267 TTTGAAAAGCTGATTGAAAAGCAGTTGTCCTTCTTCTGGCGTCCGGAGGAAGTGGACATT 7326
Query 43487 TCGATTGACCGTATGCAGTATGCGAAAATGCCGGAACATGAAAAAATCATTTTCGATTCT 43546
| ||||| || | ||| ||| |||| || || ||||| |||||||
Sbjct 7327 ACCCAGGACCGGATCGACTATCAGAACCTGCCTGACCACGAAAAGCACATTTTCATCAGC 7386
Query 43547 AACCTGCAATATCAAACCCTACTGGATACCATTCAGGGACGCGGCCCTAACCTTGCATTT 43606
|| ||| | ||||| ||| | |||||| |||| ||||| ||| |||| ||| | || ||
Sbjct 7387 AATCTGAAGTATCAGACCTTGCTGGATTCCATCCAGGGCCGCAGCCCCAACGTGGCCTTC 7446
Query 43607 CTCCCGATTGCCTCTGAT---GTATCAATGGAAACGTGGATCGAAACATGGGCGTTCAGT 43663
|| || | | || ||| | | | ||||||| ||||| ||||| ||||| |||
Sbjct 7447 CTGCCTTTGGTATC-GATTCCGGAGC--TGGAAACCTGGATTGAAACCTGGGCTTTCTCC 7503
Query 43664 GAAACAATTCACAGTCGCAGTTATACGCACAT 43695
|| || |||||| ||| || ||||||||
Sbjct 7504 GAGACGATTCACTCGCGCTCGTACACGCACAT 7535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563745473425200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |