Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq2257 167 3e-36 >seq2257 Length=8409 Score = 167 bits (184), Expect = 3e-36 Identities = 278/400 (70%), Gaps = 4/400 (1%) Strand=Plus/Minus Query 32815 TTGATTTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTC 32874 ||||| || | ||||||||||||||| | || || |||||||||||||| ||||||| Sbjct 5882 TTGATCTGAACACCGTAGTCCAAGTGACGAATACGGTTTTCTTCCACACCACGGTTGTTC 5823 Query 32875 TTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCG 32934 || || || || | | |||| ||||| || |||||||| || || ||| || || || Sbjct 5822 TTCAGAACCAGCAGTGTTTCCACTTCCAGGTGCCACATGGGGTAGAACAAGGTTGCCGCA 5763 Query 32935 CCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAAT 32994 |||||||| || ||||| || |||||| || ||||||| ||| || || |||| Sbjct 5762 CCACCACGCACGCCGCCTTGCGAGCAGGACTTCACCGCAGCCTGGAACATCTTGAAGAAC 5703 Query 32995 GGGATAATACCAGTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGCACGAATA 33054 || | ||| || || | | || ||| ||||||| |||| | || ||||| Sbjct 5702 GGCAGGCAACCCGTGTGTTGTGCTTCACCACCACGAATTTCGCTGCCTACGGCGCGAATG 5643 Query 33055 GCACCACCATTGATACCGATACCAGCTCTCTTGCTGATA--TAGTCAACGATAGAACTAG 33112 |||||||||||||||||||| || | || ||| | || ||| || | || | Sbjct 5642 CGGCCACCATTGATACCGATACCGGCACGCT--GTGACACGTAACGAACAATGGCGCTGG 5585 Query 33113 CGGTTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACT 33172 || || || ||||| || || || ||| ||| ||| ||||| ||||| |||| Sbjct 5584 TCGTGGCATTGATGCTGTCCAGGCTGTCGTCACATTCGATCAGCACGCAAGAGCTGAACT 5525 Query 33173 GACGGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGG 33212 | || || || || || || ||||||| || || || || Sbjct 5524 GGCGAGTGGGTGTGCGCACGCCAGCCATGATGGGCGTGGG 5485 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 30825 TTCGTCGCGAGCGATCAAGCGCATGATCTTGGCGTTACCTTCCATCAAACCACGCTCACC 30884 ||| || || || |||||||| ||||||||||| || |||||||||| ||||| | Sbjct 7875 TTCATCACGCGCAATCAAGCGAATGATCTTGGCATTGCCTTCCATCAGCTTGCGCTCGGC 7816 Query 30885 AAATGAGAATGTGCAAGCAAAGCTAACATAGAAACGCATTGCCTCAAGA 30933 ||| | ||| | ||| |||||||| || || || || || ||||||||| Sbjct 7815 AAAGGCGAAGGAGCAGGCAAAGCTGACGTAAAAGCGGATGGCCTCAAGA 7767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710224521413600