Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq2257 242 4e-59 >seq2257 Length=8409 Score = 242 bits (268), Expect = 4e-59 Identities = 285/381 (75%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 121982 CATGATGTCGTCAAAGACGATCGACGGGTC--TGCCAGGATGTTGCGGATGATGTGGGTG 122039 || |||||||||||| | | |||||||| || || || ||||| |||||||| ||| Sbjct 7584 CACGATGTCGTCAAAAATAACGGACGGGTCATTGGCA--ATATTGCGAATGATGTGCGTG 7527 Query 122040 TACGAACGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCCACCCAAGTTTCCAGGGT- 122098 ||||| || |||||||| ||||| ||| ||||| || || | ||| |||||||| Sbjct 7526 TACGAGCGCGAGTGAATCGTCTCGGAGAAAGCCCAGGTTTCAATCCAGGTTTCCAGCTCC 7467 Query 122099 GGTGTCGGATACGATCGGCAGAAGAACTGCGTTCGGGCCACGGCCCTGTACAGAGTCCAG 122158 || ||| |||| | ||||| | | |||| |||| |||||||| | || ||||| Sbjct 7466 GGAATCG-ATACCAAAGGCAGGAAGGCCACGTTGGGGCTGCGGCCCTGGATGGAATCCAG 7408 Query 122159 AAGGATCTGATACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGAAGATTCAT 122218 | | ||||||||||||| ||||||||||| |||||||| ||||| || || || ||| Sbjct 7407 CAAGGTCTGATACTTCAGATTGCTGATGAAAATGTGCTTTTCGTGGTCAGGCAGGTTCTG 7348 Query 122219 GTAGTCAATTCGGTCACGGGTCACGTTCACCTCTTCCGGACGCCAGAAGAATGCCAGTTG 122278 ||||| || ||||| |||| | || ||| || ||||||||||||||||| | || || Sbjct 7347 ATAGTCGATCCGGTCCTGGGTAATGTCCACTTCCTCCGGACGCCAGAAGAAGGACAACTG 7288 Query 122279 CTTTTCGATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGTCATAACGAGAAACGTTCGG 122338 |||||| ||||||||||| || | | | |||||||||||| || |||| ||||| Sbjct 7287 CTTTTCAATCAGCTTTTCAAAAATCGGATATTTTTGCTGGTCGTAGCGAGCCACGTTAAC 7228 Query 122339 CGTCTCACCGAGGAACATCGG 122359 || || || | |||||| || Sbjct 7227 CGGCTGCCCAAAGAACATGGG 7207 Score = 174 bits (192), Expect = 2e-38 Identities = 461/692 (67%), Gaps = 24/692 (3%) Strand=Plus/Minus Query 123187 CTTCGCCAAGTAATACGCCAGGTTGGTCCAGCCAATACCCAGCGTTCGACGATCCTTAGT 123246 ||| |||||||| || || |||| | ||||| ||||| | ||||| | || || Sbjct 6441 CTTGGCCAAGTAGTAAGCGTAGTTGATGACGCCAACGCCCAGGGAGCGACGCTTGTTGGT 6382 Query 123247 C---TTCTCTGCCGCCAGTACCGGGTAGTTCTGGTAGTCCAACAGACGGTCAAGTGAGCG 123303 ||| ||| ||| |||||||||| ||||||||||| |||| || || | || Sbjct 6381 TGCGTTCAGTGCAGCCTTGACCGGGTAGTCCTGGTAGTCCAGCAGAGCATCCAGAGCACG 6322 Query 123304 CACCA--AGGTGCGTACCGGGCCACGGAGGTCTTCCAGACTCTCTACCTTGCCGAGGTTG 123361 || | || | | || | || || || ||||| ||| | || |||||| Sbjct 6321 AACAATCAGTTCAG--CCAGACCGTCCAGCTCGTCCAGGGACTCCAGAGCACCCAGGTTG 6264 Query 123362 ATTGCAGACAGCGTACAAAGTGCAATCTCGCCATCGTCCTCAGGATTTTTGAGGTCATTG 123421 | || |||||||| || || || || || || || ||||| || || || || Sbjct 6263 AAAGCCGACAGCGTGCACAGCGCGATTTCACCTTC------AGGATCGTTCAGATCGTTC 6210 Query 123422 ATCGCGTGAGTAGGCAGGGCAATCTCCATGCACAGGTTGGACTGTTTCACCGGGGCCAGT 123481 | | | |||||||| || || |||||||||||||||||||| ||| || || | Sbjct 6209 AAAGGCTTGGTAGGCAGAGCGATTTCCATGCACAGGTTGGACTGGCGCACAGGAGCGCGG 6150 Query 123482 TCTGGATTGAACGGGCTGTTGGTGTTGCAGTGGTCAACGTGCTGAATGTAGATGCGTCCT 123541 || | | ||| ||||||| |||||||| ||||| |||| |||||||||||| || || Sbjct 6149 TCAGCCTGGAATGGGCTGTGCGTGTTGCAATGGTCCACGTTCTGAATGTAGATACGGCCG 6090 Query 123542 GT-CTGACTGCGCTCCTGCATAGCCACGGAGAAGGCTTCTGCTGCGGAGATGCTTTTCTT 123600 || ||| | ||||| ||||| || |||||| || | || | | ||| ||| Sbjct 6089 GTGCTGGC-ACGCTCTTGCATCAGCAAGGAGAACAGCTCCACGGCTGGCAGGCTGCGCTT 6031 Query 123601 AGCCACTTCCGGATCGGCTTCCAACTTCTCGTACA-ACTCTTCAAATTTCTTCTGGTCGG 123659 | | ||||| || || | ||||||| || | || || | | |||||||| Sbjct 6030 GCGGATGGCAGGATCCTGCTCGTACATTTCGTACAGACGC-TCGAACTCGTCCTGGTCGG 5972 Query 123660 AGAAGAAATACTCGTACA-GCTTGCCACCTGCAACGTTCGGGTGGAACAGAGTGATATTT 123718 ||||| ||||||| || | ||| | ||| ||| |||||| ||||||| Sbjct 5971 CAAAGAAGGCTTCGTACAGGCCGGGCACGT----CGTGCGGCGAGAACAGCGTGATATGG 5916 Query 123719 C-GCCCATGTTGCAGACGTGCATACAGCATTTTGTTGATTTGCAGGCCGTAGTCAACGTG 123777 | |||| || | ||| || ||||||| |||||| || | |||||||| | ||| Sbjct 5915 CTGCCCTTGAT-CAGGCGCTGGTACAGCAAGCGGTTGATCTGAACACCGTAGTCCAAGTG 5857 Query 123778 ACGAGCACGGGTGCTCTCTGTGCCACGGTTGTTCTTCATCACGATCAGGTTTTCGAAATC 123837 |||| |||| | || |||||||||||||||| || | ||| |||| | || Sbjct 5856 ACGAATACGGTTTTCTTCCACACCACGGTTGTTCTTCAGAACCAGCAGTGTTTCCACTTC 5797 Query 123838 CCAGTGCCACATAGGGTAGAAGTAAGTTGCCG 123869 | ||||||||| |||||||| | ||||||| Sbjct 5796 CAGGTGCCACATGGGGTAGAACAAGGTTGCCG 5765 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 121701 TGAGTTCCTGACAAATGCAAGGCTTCATCACGAGCAATTAACTCGATGATGTTGGTATTG 121760 || || || | || ||||| ||||||||||| ||||| || ||||| |||| |||| Sbjct 7898 TGCGTGCCAGTCAGATGCAGCGCTTCATCACGCGCAATCAAGCGAATGATCTTGGCATTG 7839 Query 121761 CCCAGCATAACCCCACGCTCACCGAAAGCGAAGGAGCAGGCAAAGCTCACGTAGAAGCGG 121820 || ||| | | ||||| | || |||||||||||||||||||| ||||| |||||| Sbjct 7838 CCTTCCATCAGCTTGCGCTCGGCAAAGGCGAAGGAGCAGGCAAAGCTGACGTAAAAGCGG 7779 Query 121821 ATAGCTTCGAGTGCGTTGATATTGTGCAGGCACAGGTACAGC 121862 || || || || |||| | || ||||||||||||| Sbjct 7778 ATGGCCTCAAGAATATTGACGCTCATCATGCACAGGTACAGC 7737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485983174046400