Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_023717.1
Length=151924
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 242 4e-59
>seq2257
Length=8409
Score = 242 bits (268), Expect = 4e-59
Identities = 285/381 (75%), Gaps = 6/381 (2%)
Strand=Plus/Minus
Query 121982 CATGATGTCGTCAAAGACGATCGACGGGTC--TGCCAGGATGTTGCGGATGATGTGGGTG 122039
|| |||||||||||| | | |||||||| || || || ||||| |||||||| |||
Sbjct 7584 CACGATGTCGTCAAAAATAACGGACGGGTCATTGGCA--ATATTGCGAATGATGTGCGTG 7527
Query 122040 TACGAACGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCCACCCAAGTTTCCAGGGT- 122098
||||| || |||||||| ||||| ||| ||||| || || | ||| ||||||||
Sbjct 7526 TACGAGCGCGAGTGAATCGTCTCGGAGAAAGCCCAGGTTTCAATCCAGGTTTCCAGCTCC 7467
Query 122099 GGTGTCGGATACGATCGGCAGAAGAACTGCGTTCGGGCCACGGCCCTGTACAGAGTCCAG 122158
|| ||| |||| | ||||| | | |||| |||| |||||||| | || |||||
Sbjct 7466 GGAATCG-ATACCAAAGGCAGGAAGGCCACGTTGGGGCTGCGGCCCTGGATGGAATCCAG 7408
Query 122159 AAGGATCTGATACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGAAGATTCAT 122218
| | ||||||||||||| ||||||||||| |||||||| ||||| || || || |||
Sbjct 7407 CAAGGTCTGATACTTCAGATTGCTGATGAAAATGTGCTTTTCGTGGTCAGGCAGGTTCTG 7348
Query 122219 GTAGTCAATTCGGTCACGGGTCACGTTCACCTCTTCCGGACGCCAGAAGAATGCCAGTTG 122278
||||| || ||||| |||| | || ||| || ||||||||||||||||| | || ||
Sbjct 7347 ATAGTCGATCCGGTCCTGGGTAATGTCCACTTCCTCCGGACGCCAGAAGAAGGACAACTG 7288
Query 122279 CTTTTCGATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGTCATAACGAGAAACGTTCGG 122338
|||||| ||||||||||| || | | | |||||||||||| || |||| |||||
Sbjct 7287 CTTTTCAATCAGCTTTTCAAAAATCGGATATTTTTGCTGGTCGTAGCGAGCCACGTTAAC 7228
Query 122339 CGTCTCACCGAGGAACATCGG 122359
|| || || | |||||| ||
Sbjct 7227 CGGCTGCCCAAAGAACATGGG 7207
Score = 174 bits (192), Expect = 2e-38
Identities = 461/692 (67%), Gaps = 24/692 (3%)
Strand=Plus/Minus
Query 123187 CTTCGCCAAGTAATACGCCAGGTTGGTCCAGCCAATACCCAGCGTTCGACGATCCTTAGT 123246
||| |||||||| || || |||| | ||||| ||||| | ||||| | || ||
Sbjct 6441 CTTGGCCAAGTAGTAAGCGTAGTTGATGACGCCAACGCCCAGGGAGCGACGCTTGTTGGT 6382
Query 123247 C---TTCTCTGCCGCCAGTACCGGGTAGTTCTGGTAGTCCAACAGACGGTCAAGTGAGCG 123303
||| ||| ||| |||||||||| ||||||||||| |||| || || | ||
Sbjct 6381 TGCGTTCAGTGCAGCCTTGACCGGGTAGTCCTGGTAGTCCAGCAGAGCATCCAGAGCACG 6322
Query 123304 CACCA--AGGTGCGTACCGGGCCACGGAGGTCTTCCAGACTCTCTACCTTGCCGAGGTTG 123361
|| | || | | || | || || || ||||| ||| | || ||||||
Sbjct 6321 AACAATCAGTTCAG--CCAGACCGTCCAGCTCGTCCAGGGACTCCAGAGCACCCAGGTTG 6264
Query 123362 ATTGCAGACAGCGTACAAAGTGCAATCTCGCCATCGTCCTCAGGATTTTTGAGGTCATTG 123421
| || |||||||| || || || || || || || ||||| || || || ||
Sbjct 6263 AAAGCCGACAGCGTGCACAGCGCGATTTCACCTTC------AGGATCGTTCAGATCGTTC 6210
Query 123422 ATCGCGTGAGTAGGCAGGGCAATCTCCATGCACAGGTTGGACTGTTTCACCGGGGCCAGT 123481
| | | |||||||| || || |||||||||||||||||||| ||| || || |
Sbjct 6209 AAAGGCTTGGTAGGCAGAGCGATTTCCATGCACAGGTTGGACTGGCGCACAGGAGCGCGG 6150
Query 123482 TCTGGATTGAACGGGCTGTTGGTGTTGCAGTGGTCAACGTGCTGAATGTAGATGCGTCCT 123541
|| | | ||| ||||||| |||||||| ||||| |||| |||||||||||| || ||
Sbjct 6149 TCAGCCTGGAATGGGCTGTGCGTGTTGCAATGGTCCACGTTCTGAATGTAGATACGGCCG 6090
Query 123542 GT-CTGACTGCGCTCCTGCATAGCCACGGAGAAGGCTTCTGCTGCGGAGATGCTTTTCTT 123600
|| ||| | ||||| ||||| || |||||| || | || | | ||| |||
Sbjct 6089 GTGCTGGC-ACGCTCTTGCATCAGCAAGGAGAACAGCTCCACGGCTGGCAGGCTGCGCTT 6031
Query 123601 AGCCACTTCCGGATCGGCTTCCAACTTCTCGTACA-ACTCTTCAAATTTCTTCTGGTCGG 123659
| | ||||| || || | ||||||| || | || || | | ||||||||
Sbjct 6030 GCGGATGGCAGGATCCTGCTCGTACATTTCGTACAGACGC-TCGAACTCGTCCTGGTCGG 5972
Query 123660 AGAAGAAATACTCGTACA-GCTTGCCACCTGCAACGTTCGGGTGGAACAGAGTGATATTT 123718
||||| ||||||| || | ||| | ||| ||| |||||| |||||||
Sbjct 5971 CAAAGAAGGCTTCGTACAGGCCGGGCACGT----CGTGCGGCGAGAACAGCGTGATATGG 5916
Query 123719 C-GCCCATGTTGCAGACGTGCATACAGCATTTTGTTGATTTGCAGGCCGTAGTCAACGTG 123777
| |||| || | ||| || ||||||| |||||| || | |||||||| | |||
Sbjct 5915 CTGCCCTTGAT-CAGGCGCTGGTACAGCAAGCGGTTGATCTGAACACCGTAGTCCAAGTG 5857
Query 123778 ACGAGCACGGGTGCTCTCTGTGCCACGGTTGTTCTTCATCACGATCAGGTTTTCGAAATC 123837
|||| |||| | || |||||||||||||||| || | ||| |||| | ||
Sbjct 5856 ACGAATACGGTTTTCTTCCACACCACGGTTGTTCTTCAGAACCAGCAGTGTTTCCACTTC 5797
Query 123838 CCAGTGCCACATAGGGTAGAAGTAAGTTGCCG 123869
| ||||||||| |||||||| | |||||||
Sbjct 5796 CAGGTGCCACATGGGGTAGAACAAGGTTGCCG 5765
Score = 98.7 bits (108), Expect = 1e-15
Identities = 119/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 121701 TGAGTTCCTGACAAATGCAAGGCTTCATCACGAGCAATTAACTCGATGATGTTGGTATTG 121760
|| || || | || ||||| ||||||||||| ||||| || ||||| |||| ||||
Sbjct 7898 TGCGTGCCAGTCAGATGCAGCGCTTCATCACGCGCAATCAAGCGAATGATCTTGGCATTG 7839
Query 121761 CCCAGCATAACCCCACGCTCACCGAAAGCGAAGGAGCAGGCAAAGCTCACGTAGAAGCGG 121820
|| ||| | | ||||| | || |||||||||||||||||||| ||||| ||||||
Sbjct 7838 CCTTCCATCAGCTTGCGCTCGGCAAAGGCGAAGGAGCAGGCAAAGCTGACGTAAAAGCGG 7779
Query 121821 ATAGCTTCGAGTGCGTTGATATTGTGCAGGCACAGGTACAGC 121862
|| || || || |||| | || |||||||||||||
Sbjct 7778 ATGGCCTCAAGAATATTGACGCTCATCATGCACAGGTACAGC 7737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 485983174046400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |