Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq2257 199 4e-46 >seq2257 Length=8409 Score = 199 bits (220), Expect = 4e-46 Identities = 259/356 (73%), Gaps = 4/356 (1%) Strand=Plus/Minus Query 118886 CATGATGTCATCAAAGACGATCGACGGATC--TGCCAGGATGTTACGGATGATATGGGTG 118943 || |||||| ||||| | | ||||| || || || || || || ||||| || ||| Sbjct 7584 CACGATGTCGTCAAAAATAACGGACGGGTCATTGGCA--ATATTGCGAATGATGTGCGTG 7527 Query 118944 TATGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTT 119003 || ||||| ||||| || ||||| ||| ||||| || || | ||| |||||||| Sbjct 7526 TACGAGCGCGAGTGAATCGTCTCGGAGAAAGCCCAGGTTTCAATCCAGGTTTCCAGCTCC 7467 Query 119004 GTGTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGA 119063 | || || | || || | | |||| || | |||||||| | |||||||| Sbjct 7466 GGAATCGATACCAAAGGCAGGAAGGCCACGTTGGGGCTGCGGCCCTGGATGGAATCCAGC 7407 Query 119064 AGGATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG 119123 | | |||| |||||||| ||||||||||| |||||||| ||||| || ||||| ||| Sbjct 7406 AAGGTCTGATACTTCAGATTGCTGATGAAAATGTGCTTTTCGTGGTCAGGCAGGTTCTGA 7347 Query 119124 TAGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGC 119183 |||||||| ||||| |||| | || ||||| ||||||||||||||||| | || ||| Sbjct 7346 TAGTCGATCCGGTCCTGGGTAATGTCCACTTCCTCCGGACGCCAGAAGAAGGACAACTGC 7287 Query 119184 TTCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTT 119239 || || |||||||| || || | | | ||| |||||||| ||||||| ||||| Sbjct 7286 TTTTCAATCAGCTTTTCAAAAATCGGATATTTTTGCTGGTCGTAGCGAGCCACGTT 7231 Score = 179 bits (198), Expect = 4e-40 Identities = 701/1085 (65%), Gaps = 34/1085 (3%) Strand=Plus/Minus Query 119903 GGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAAT 119962 ||| | ||||| ||| | | | |||| || ||||||| ||| || |||| |||| ||| Sbjct 6804 GGACTGCTTGACGGATACCAGACCACGCGGAGGCTCAATACCATTGGTGGCATTGGCAAT 6745 Query 119963 CTGACTGGACGTCTCGCAAGGCATCATCGTGGACAGCGTAGAGTTACGCAGTCCATGAAT 120022 ||| ||||| || || ||||||||| | || ||| || ||||| ||||| || || | Sbjct 6744 CTGGCTGGAGGTTTCCGAAGGCATCAAGGCGGTCAGGGTCGAGTTGCGCAGACCGTGCTT 6685 Query 120023 AGCGATGTCGATACGCAGCTTTTCCCAATCCATCTTCAGTTCCGCAGTGTGGAGGCCATC 120082 |||| || |||||| ||||||||||| | ||| | | || || || || Sbjct 6684 GACGATATCAGCACGCAGGGCTTCCCAATCCAGGTGCAGCGGCTCGTTGCAGATACCGTC 6625 Query 120083 TACCTCTTTCTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGTAAGTGGTCTCGTGGAA 120142 || ||||||||||| |||| | ||||| | || | ||| || || || | ||| Sbjct 6624 CACATCTTTCTTGTAGGTGTCGGTAGGCAGCAAACCAGCGGCGTACGTCGTTTCATCGAA 6565 Query 120143 GAGATCACATTTACCCAATTCTTTTGCCAGGTCAACCGACGCTTCCAGTAGGTAATACTG 120202 | ||| || ||| |||| | || | ||||| || | || ||||| ||||| Sbjct 6564 GGCATCGCAAGGACCGTATTCGCGCGACAACTGCACCGAAGCCTTCAACAGGTAGTACTG 6505 Query 120203 GAATGCTTCAGCCAGTTCGT--GAACAGCGTTCGCTGCACGAGGGTCGCTGTATTTCAGG 120260 || |||||| | || || | ||| | ||| || ||| ||| | Sbjct 6504 GATGGCTTCAAAC-GTGCGGTGGGTCAGACC-CAAGGCAGCGGGATCGGAGTAACGGGTG 6447 Query 120261 CCACGCTTCGCCAGGTAGTATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCGCAGT 120320 || ||| |||| |||||| || ||||| | ||||| ||||| | || ||| Sbjct 6446 CCGTTCTTGGCCAAGTAGTAAGCGTAGTTGATGACGCCAACGCCCAGGGAGCGACGCTTG 6387 Query 120321 TTAGTC---TTCTCTGCCGCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAAT 120377 || || ||| ||| ||| ||||| |||| ||| || || | |||| ||||| Sbjct 6386 TTGGTTGCGTTCAGTGCAGCCTTGACCGGGTAGTCCTGGTAGTCCAGCAGAGCATCCAGA 6327 Query 120378 GCACGAACCAGT-GTACGGACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAG 120436 |||||||| | || | | ||| | | || || ||||| ||||| || || Sbjct 6326 GCACGAACAATCAGTTCAGCCAGACCGTC-CAGCTCGTCCAGGGACTCCAGAGCACCCAG 6268 Query 120437 GTTGATGGCAGACAGAGTACACAGGGCCACTTCCCCC---GGGTCGTTCGGGTCATTAAT 120493 ||||| || ||||| || ||||| || | ||| || || |||||| | || || | Sbjct 6267 GTTGAAAGCCGACAGCGTGCACAGCGCGATTTCACCTTCAGGATCGTTCAGATCGTTCA- 6209 Query 120494 GTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGG 120553 || || | || ||||| |||||||||||||||||||||||||| ||| || Sbjct 6208 ------AA--GGCTTGGTAGGCAGAGCGATTTCCATGCACAGGTTGGACTGGCGCACAGG 6157 Query 120554 GGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAAT 120613 || | || | | ||| ||||| | |||||||| ||||| |||| ||| | ||| || Sbjct 6156 AGCGCGGTCAGCCTGGAATGGGCTGTGCGTGTTGCAATGGTCCACGTTCTGAATGTAGAT 6097 Query 120614 ACGGCCTGT-CTGAGAACGCTCCTGACCAAACACGGAGAAGGCATCTGCCGCCGAGATGG 120672 |||||| || ||| | |||||| || | || |||||| || | || | | | Sbjct 6096 ACGGCCGGTGCTG-GCACGCTCTTGCATCAGCAAGGAGAACAGCTCCACGGCTGGCAGGC 6038 Query 120673 TTTTCTTCGCCACAGAAGGAT-CTGCT--TCCAGTTCCTCATAGAGCTGTTGGAATTTCT 120729 | ||| | | ||||| ||||| | || | || || || | | ||| | | Sbjct 6037 TGCGCTTGCGGATGGCAGGATCCTGCTCGTACATT---TCGTACAGACGCTCGAACTCGT 5981 Query 120730 CTTGGTTAGAGAAGAAATACTCATACAGCTTACCTTTTGCCACGTTAGGATGGAACAATG 120789 | |||| | ||||| || ||||| || | ||| || ||||| | Sbjct 5980 CCTGGTCGGCAAAGAAGGCTTCGTACAG---GCCGGGCACGTCGTGCGGCGAGAACAGCG 5924 Query 120790 TGATGTTCTTACCCTGCTGGAGGCGAGAGTACAGCATTTTGTTCAACTGAAGTCCGTAGT 120849 |||| | | |||| ||||| |||||||| ||| | ||||| ||||||| Sbjct 5923 TGATATGGCTGCCCTTGATCAGGCGCTGGTACAGCAAGCGGTTGATCTGAACACCGTAGT 5864 Query 120850 CCACATGGCGAGCACGAGTGCTC-TCAGTACCACGGTTGTTCTTCAGCACAATCAGGCTT 120908 ||| || ||| ||| || || || |||||||||||||||||| || | ||| || Sbjct 5863 CCAAGTGACGAATACG-GTTTTCTTCCACACCACGGTTGTTCTTCAGAACCAGCAGTGTT 5805 Query 120909 TCAAAATCCCAGTGCCACATCGGATAAAAATAGTTAGCCGATGCCTTACGGACGCCCCCT 120968 || | ||| ||||||||| || || || || | |||| | ||| ||||| ||| Sbjct 5804 TCCACTTCCAGGTGCCACATGGGGTAGAACAAGGTTGCCGCACCACCACGCACGCCGCCT 5745 Query 120969 TGCGA 120973 ||||| Sbjct 5744 TGCGA 5740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477145603751200