Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2066 165 2e-35 seq4834 150 4e-31 seq5063 131 3e-25 seq7156 104 5e-17 >seq2066 Length=2850 Score = 165 bits (182), Expect = 2e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660 ||| ||||| || || || || ||||| || || || || || ||| | | || || || Sbjct 1 AACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 60 Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720 ||||| ||||| || ||||| || | ||||||||||| || || |||||||| ||||| Sbjct 61 GAGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCTTG 120 Query 82721 AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 |||||| || || ||||| ||||| || ||| || ||| ||||| | |||||||||||| Sbjct 121 AATCTTCGCCTTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTTATCGTCTT 180 Query 82781 GCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| ||||| ||||| || || || |||||| Sbjct 181 GCCAGTCAAGGTCTTCACGAAGATTTGCATT 211 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || || || || ||||| || || || || || || ||| ||| Sbjct 856 CGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCG 915 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || ||||| || ||||| || | ||| |||||||| || ||||| ||||| Sbjct 916 TCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTG 975 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || || || ||||| || || | ||| ||||| | ||| ||| Sbjct 976 TCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCTTCGACTTCGAGAGTGATC 1035 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 1036 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1070 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||||||||| ||||| || || || || || || ||| ||| Sbjct 1217 CGAAGGACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCG 1276 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || ||||| || ||||| || | ||| |||||||| || ||||| ||||| Sbjct 1277 TCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTG 1336 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || ||||| || || ||||| | || ||| Sbjct 1337 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCACTTCGAGGGTGATC 1396 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| |||| ||||| || || || |||||| Sbjct 1397 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 1432 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || || || || ||||| || || || || || || | | || Sbjct 1939 ACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCC 1998 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| ||||| || ||||| | | ||||||||||| || ||||||||||| Sbjct 1999 ATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTT 2058 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || || || || || || | ||| ||||| | || || Sbjct 2059 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGAT 2118 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| ||||| ||||| || || |||||||| Sbjct 2119 CGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2154 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| ||||| ||||| || || || || || || || | | | || Sbjct 1445 CGGAGAACCAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCCGACAATGTGCGGCCA 1504 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || ||||| || ||||| || | ||||||||||| || || |||||||| Sbjct 1505 TCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTG 1564 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || || || | ||| ||||| | || ||| Sbjct 1565 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATC 1624 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| || || |||||||| Sbjct 1625 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 1659 Score = 113 bits (124), Expect = 9e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||| || |||||||| || | || ||||||||||| ||||||||||| || || ||||| Sbjct 342 TTTACCGGCAAAGATGAGGCGCTGCTGATCTGGAGGGATTCCTTCCTTGTCCTGGATCTT 401 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || ||||| || || ||||| || ||| || |||| ||| ||||||||||| || Sbjct 402 GGCCTTCACATTCTCGATGGTATCGGAAGCTTCGACCTCCAGAGTGATCGTCTTGCCCGT 461 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 462 GAGAGTCTTCACGAAGATTTGCATT 486 >seq4834 Length=88581 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| |||||||| || ||||| || || || || || ||| | | || Sbjct 21124 ACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTACGGCC 21183 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || |||||||| |||||||| || | ||||| || ||||| || |||||||| Sbjct 21184 GTCCTCAAGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTT 21243 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||||||| || || || || || || || || || ||| ||||| | || || Sbjct 21244 ATCTTGAATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGAT 21303 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | |||||| ||||| || ||||| Sbjct 21304 GGTCTTTCCGGTGAGCGTCTTGACAAAGATTTGCAT 21339 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| ||||| || || ||||| || || || || | Sbjct 22316 TACCGCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 22375 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||||| || || || ||||| || ||||| || | ||| || || |||| Sbjct 22376 ATAACGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGAG 22435 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||||||||| || || || || || || ||||| | ||| | Sbjct 22436 GGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCGA 22495 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || ||||| || || | |||||| || || |||||||| Sbjct 22496 CTTCAAGGGTGATTGTCTTCCCGGTAAGCGTCTTCACGAAGATCTGCAT 22544 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || |||||||| || ||||| || || || || | Sbjct 21703 TACCACCACGAAGACGGAGTACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 21762 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | |||| || ||||| || || ||||| || || || || | || || || |||| Sbjct 21763 ACAAAGTTCTGCCATCTTCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCAGGAG 21822 Query 82702 GTATTCCTTCCTTATCTTGAAT 82723 | || ||||||||||||||||| Sbjct 21823 GGATGCCTTCCTTATCTTGAAT 21844 >seq5063 Length=4177 Score = 131 bits (144), Expect = 3e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||| || ||||| || ||||| || || || || || ||| | | || Sbjct 2222 ACGAAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCC 2281 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| ||||| || ||||| | | ||||||||||| || |||||||| || Sbjct 2282 ATCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTT 2341 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || || || ||||| || | ||| ||||| | || || Sbjct 2342 GTCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGAT 2401 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||||| || | ||||| ||||| || |||||| Sbjct 2402 CGTCTTGCCGGTGAGAGTCTTCACAAAGATTTGCATT 2438 Score = 127 bits (140), Expect = 4e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||| ||||| || || ||||| || || || || || ||| | | || Sbjct 1679 ACGGAGAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCC 1738 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || || ||||||||||| || | || ||||| || || ||||| ||||| Sbjct 1739 GTCTTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGTGGGATTCCCTCCTT 1798 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| || || ||||||||||| || || | ||| ||||| | ||| || Sbjct 1799 GTCCTGAATCTTGGCCTTCACATTTTCAATGGTGTCCGAGGCTTCGACTTCAAGAGTGAT 1858 Query 82775 CGTCTTGCCT 82784 ||||| ||| Sbjct 1859 GGTCTTTCCT 1868 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||| ||||| ||||| || || || || || || | | || Sbjct 2599 CGGAGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA 2658 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || ||||| ||||| || ||||| | | ||||||||||| || ||||||||||| Sbjct 2659 TCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTG 2718 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || || || | ||| ||||| | || ||| Sbjct 2719 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATC 2778 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || || ||||| Sbjct 2779 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 2813 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||| |||| || ||||||||||| ||||||||||| || || |||||| Sbjct 3010 TTACCGGCAAAGATCAGTCGCTGCTGATCTGGAGGGATTCCTTCCTTGTCCTGGATCTTT 3069 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || || ||||| || ||| || |||| ||| |||||||| || || Sbjct 3070 GCCTTCACATTCTCGATGGTATCGGAAGCTTCGACCTCCAGAGTGATCGTCTTTCCCGTG 3129 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 3130 AGAGTCTTCACGAAGATTTGCATT 3153 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| ||||| || || || || ||||| || || || || || || | | ||| Sbjct 3166 CGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCG 3225 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || ||||| |||||||| || | ||| || ||||| || ||||||||||| Sbjct 3226 TCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGTTGCTGGTCTGGGGGGATTCCTTCCTTG 3285 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||||| ||||| || || || || || || || || Sbjct 3286 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 3320 >seq7156 Length=22399 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| || | || || ||||| || ||||| ||||||||||| ||||| ||| Sbjct 9866 CCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGGATCTTGGCT 9807 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || || ||| | || || || | ||| || |||||||| ||||| Sbjct 9806 TTGACATTTTCGATGGTGTCAGAGGCCTCGACCTCGAGAGTGATGGTCTTGCCAGTCAAG 9747 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 9746 GTCTTGACGAAAATCTGCAT 9727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981732726745890