Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5063 105 2e-17 seq4834 105 2e-17 seq2066 105 2e-17 >seq5063 Length=4177 Score = 105 bits (116), Expect = 2e-17 Identities = 145/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || |||||||| | ||||| ||| || ||||| |||| Sbjct 2422 AAGACTCTCACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTCCGACACGATCGAGAAC 2363 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGA-CTT-ATC 206301 || ||| ||||| || || |||||||||||| || || |||| || ||| ||| Sbjct 2362 GTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGA---TCAACAGCGCTTGATC 2306 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 |||||||||||||| | || ||||| | ||| | |||| |||||| ||||||| ||| Sbjct 2305 TTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAG 2246 Query 206362 TCTACTCTTCACCTTGTT 206379 ||||| || ||||| ||| Sbjct 2245 TCTACCCTCCACCTGGTT 2228 Score = 93.3 bits (102), Expect = 1e-13 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 206196 AGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAA 206255 |||||| || |||||| | ||||| ||| || ||||| | ||| || ||| || Sbjct 1868 AGGAAAGACCATCACTCTTGAAGTCGAAGCCTCGGACACCATTGAAAATGTGAAGGCCAA 1809 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 |||||| || || || ||||| || || || | || ||||| || || ||||| Sbjct 1808 GATTCAGGACAAGGAGGGAATCCCACCCGATCAGCAGCGCCTGATCTTTGCTGGCAAGCA 1749 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 | | ||||| || | ||| | |||| |||||| ||||||| ||||| ||||||||||| Sbjct 1748 GCTCGAAGACGGGCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTTCACCT 1689 Query 206376 TGTT 206379 ||| Sbjct 1688 GGTT 1685 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| | ||||| ||| || ||||| |||| Sbjct 2798 AAGACCCTGACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTCCGACACCATCGAGAAC 2739 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATC 206301 || ||| ||||| || || || ||||||||| || || |||| || || ||| Sbjct 2738 GTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGA---TCAACAGCGTTTGATC 2682 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 |||||||||||||| | || ||||| | || || | || |||||| ||||||| || Sbjct 2681 TTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAAGGAA 2622 Query 206362 TCTACTCTTCACCTTGT 206378 || ||||||||||| || Sbjct 2621 TCGACTCTTCACCTGGT 2605 >seq4834 Length=88581 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| |||||||| ||||| || ||||| | ||||| ||| ||| ||| Sbjct 21336 CAAATCTTTGTCAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTCGAAGCTTCGGAC 21277 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| ||||||||||| || ||||| || || ||| || Sbjct 21276 ACAATCGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCCGACCAACAG 21217 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| |||||||| ||| | || || || | ||| | | || |||||| | Sbjct 21216 CGCCTCATCTTTGCCGGAAAACAGCTTGAGGACGGCCGTACTCTTTCAGACTACAACATT 21157 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||||||||| ||| Sbjct 21156 CAGAAGGAGTCTACTCTCCAC 21136 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || ||||| | ||||| ||| || || || |||| Sbjct 22529 AAGACGCTTACCGGGAAGACAATCACCCTTGAAGTCGAAGCCTCGGATACTATCGAGAAC 22470 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || ||||| || |||||| ||| | || |||||| Sbjct 22469 GTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCGGACCAGCAACGCCTCATCTTC 22410 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || || || | || || |||| |||||| ||||||| ||||| Sbjct 22409 GCCGGAAAGCAGCTCGAGGACGGCCGCACGTTATCCGACTACAACATCCAGAAGGAGTCC 22350 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||| | ||| | | ||||| Sbjct 22349 ACTCTCCACTTGGTTCTCCGTCTTCG 22324 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 |||||||| || ||||| || || ||| || | || || ||||||||||||||| Sbjct 21844 ATTCAAGATAAGGAAGGCATCCCTCCTGACCAGCAGCGCCTCATTTTCGCCGGAAAGCAG 21785 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 | |||||||| || |||||| |||| |||||| ||||||| ||||||||||| || Sbjct 21784 CTTGAAGATGGCAGAACTTTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCA 21729 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 204770 TGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 204829 || ||||||||||| ||||||| || ||||| | |||||| || |||||||| |||||| Sbjct 21729 TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAAAGTTCTGCCATCTTCAAGCTGC 21788 Query 204830 TTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| || || || || || Sbjct 21789 TTTCCGGCGAAAATGAGGCGCTGCTG 21814 >seq2066 Length=2850 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || ||||||||| | ||||| ||| || ||||| | || Sbjct 1055 AAGACCCTGACCGGCAAGACGATCACTCTCGAAGTCGAAGCCTCCGACACCATTGAGAAC 996 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || ||||| || || ||| | || |||||| Sbjct 995 GTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCAGCAACGCCTCATCTTC 936 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | ||||| ||| | || | | || |||||| ||||||| ||||| Sbjct 935 GCCGGAAAGCAGCTCGAAGACGGACGAACCCTCTCGGACTACAACATCCAGAAGGAGTCC 876 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||| ||| | ||||||| Sbjct 875 ACCCTTCACCTGGTTCTTCGACTTCG 850 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| | |||||||| ||| || || |||| Sbjct 1416 AAGACCCTGACCGGCAAGACGATCACCCTCGAAGTGGAGGCTTCGGATACCATCGAGAAC 1357 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || || ||| | || |||||| Sbjct 1356 GTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAACGCCTCATCTTC 1297 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | ||||| ||| | || | | || |||||| ||||||| || ||| Sbjct 1296 GCCGGAAAGCAGCTCGAAGACGGACGAACCCTCTCGGACTACAACATCCAGAAGGAATCT 1237 Query 206365 ACTCTTCACCTTGT 206378 ||||||||||| || Sbjct 1236 ACTCTTCACCTGGT 1223 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || |||||||| | ||||| ||| || ||||| |||| || ||| Sbjct 1635 ACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTCGGACACCATCGAGAACGTCAAGGCC 1576 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || || || | || ||||||||||||||| Sbjct 1575 AAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAGCGCCTCATCTTCGCCGGAAAG 1516 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||| | || ||| | || |||||| |||| || || || ||||||||| Sbjct 1515 CAGCTCGAGGATGGCCGCACATTGTCGGACTACAACATCCAAAAGGAATCGACTCTTCAC 1456 Query 206374 CTTGTTTTGAGACTTCG 206390 || ||| | ||||||| Sbjct 1455 CTGGTTCTCCGACTTCG 1439 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || ||||| ||| | ||||| ||| ||||||||| | || || ||| Sbjct 186 ACTGGCAAGACGATAACTCTCGAAGTCGAAGCTTCTGACACCATTGAGAATGTCAAGGCG 127 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| ||| || || || | || ||||||||||||||| Sbjct 126 AAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAACAGCGCCTCATCTTCGCCGGAAAG 67 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | || ||||| | ||| | | || |||||| ||||||| ||||| || || ||| Sbjct 66 CAACTCGAGGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCAC 7 Query 206374 CTTGTT 206379 | ||| Sbjct 6 TTGGTT 1 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| | ||| |||||||| || ||||| ||||||| || ||||| | | || Sbjct 850 CGAAGTCGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTT 909 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||| ||||| |||||||||||||||||||| || ||||| ||| Sbjct 910 CGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGA 954 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| | ||| ||||||||||| || || || |||| || ||||| | ||| || Sbjct 1439 CGAAGTCGGAGAACCAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCCGACAATGTG 1498 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| || |||||||||||||||||||| || || |||||| Sbjct 1499 CGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGA 1543 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || |||||||||||||| || ||||||| || ||||| | | || | ||| ||||| Sbjct 1223 ACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTCG 1282 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||||||||| || ||||| ||| Sbjct 1283 AGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGA 1315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181707082986710