Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq4842 168 1e-35
seq1619 158 2e-32
seq7501 145 1e-28
seq7237 111 2e-18
seq6232 109 8e-18
seq6320 96.9 5e-14
seq2592 96.9 5e-14
>seq4842
Length=3430
Score = 168 bits (186), Expect = 1e-35
Identities = 172/223 (77%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979
||||| |||||||||||||| || || |||| || |||| | ||| |||
Sbjct 3044 GTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCGATGAGCATC 2991
Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039
|||||||| || ||||||||| | |||| ||||||| | ||||||| ||||| ||
Sbjct 2990 ATGAACTCCTTCGTCAACGACGTCTTCGAGCGCATCGCCGGCGAGGCCTCGCGCCTCGCC 2931
Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099
| || |||||| ||| ||| ||| | | |||||||||||||||||||| ||||| |||
Sbjct 2930 CACTACAACAAACGCTCCACCATCTCCTCCCGCGAGATCCAGACCGCCGTCCGCCTCATC 2871
Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| | ||| |||||||||| |||||||||||||||||||||||
Sbjct 2870 CTCCCCGGAGAACTGGCCAAGCACGCCGTCTCCGAGGGCACCA 2828
>seq1619
Length=706
Score = 158 bits (174), Expect = 2e-32
Identities = 275/395 (70%), Gaps = 4/395 (1%)
Strand=Plus/Plus
Query 2133440 GCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCG 2133499
|||||| ||||| |||||||| |||| ||| | ||||||||||||| | | |
Sbjct 283 GCGCGAAGGCCTGCTGGACACGCCCAAGCGTGCGGCCAAGGCCATGCAATACCTGTGTCA 342
Query 2133500 CGGCCATC-GCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGG 2133558
|||| ||| ||| || ||| | | |||| ||| || || || ||| || |
Sbjct 343 CGGCTATCAGCA-GAGCCTAGAGCAGATCGTCAACGGTGCACTGTTCGACTCGGACAACG 401
Query 2133559 ACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGC 2133618
|||||||||||| || ||||| || || | | || |||||||||||||||||||||
Sbjct 402 ACGAGATGGTGATCGTACGCGACATCGAGCTGTATTCGTTGTGCGAGCACCACCTGCTGC 461
Query 2133619 CCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCA 2133678
| || ||||||||||| ||||| | |||| | ||| |||||||| | | || ||| |
Sbjct 462 CGTTCATCGGCAAGGCGCACGTTGCCTACATCCCCACGGGCAAGGTGCTGGGGCTGTCGA 521
Query 2133679 AGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACGC 2133738
| | ||||||| ||||||||||| | ||| | || | |||||| || || |
Sbjct 522 AAGTGGCGCGCATTGTCGACATGTTCGCGCGCCGGCTGCAGATCCAGGAGAACCTGACAC 581
Query 2133739 GCCAGATCGCCGAGAGCGTGAGCC-AGGTTACGGGCGCGCGCGGCGTCGGCGTCGTCCTC 2133797
| ||| | |||||| ||| ||| |||| || || |||||| | || || ||
Sbjct 582 GACAGGTGGCCGAG-GCGATTGCCGAGGTGACCCATGCCGCCGGCGTGGCAGTGGTGATC 640
Query 2133798 GAGGGCCTGCACATGTGCGTGTGTATGCGCGGCGT 2133832
|||| | |||||||||| || |||||||| ||
Sbjct 641 GAGGCCAAGCACATGTGCATGATGATGCGCGGGGT 675
>seq7501
Length=6922
Score = 145 bits (160), Expect = 1e-28
Identities = 139/178 (78%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024
||| ||||||| ||||||||||| || ||||||||| | |||| ||||||| | |||
Sbjct 5 AAGGCCATGTCTATCATGAACTCCTTCGTCAACGACGTATTCGAGCGCATCGCCGGCGAA 64
Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084
||| ||||| || | || |||||||||| |||||| | ||||| |||||||||
Sbjct 65 GCCTCGCGCCTCGCACACTACAACAAGCGCTCGACGATCTCGTCCCGCGAAATCCAGACC 124
Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| ||||| ||| | | || ||||| || | |||||||||||||||||| ||||
Sbjct 125 GCCGTCCGCCTCATCCTCCCTGGTGAACTCGCGAAGCACGCCGTCTCCGAGGGAACCA 182
>seq7237
Length=102105
Score = 111 bits (122), Expect = 2e-18
Identities = 133/178 (75%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 262106 ATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAAC 262165
|| ||| || | || ||||| |||||||| || |||||| |||||||||||||| ||||
Sbjct 85491 ATCGTCACGTCGCAGATCGAAACCGGCACTCCTTACATGCTCTACAAGGACGCCTGCAAC 85432
Query 262166 CTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAACCTGTGCACCGAGAT 262224
| || ||||||| ||||||| || || | | || | ||||||| |||||||||||
Sbjct 85431 CAGAAGTCCAACCAGAAGAACCTCGGGACGATCA-AGTGCTCCAACCTCTGCACCGAGAT 85373
Query 262225 CGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCTCTCGAGCGTGGCCCTG 262282
|||||||| || ||||| || | | ||||||||||| | ||| ||||||
Sbjct 85372 CGTCCAGTACTCTTCGCCTGAAGAAGTAGCCGTGTGCAACCTGGCCTCCGTCGCCCTG 85315
Score = 98.7 bits (108), Expect = 1e-14
Identities = 124/168 (74%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTT-CGACAGCATGGCCTGCGCAACTCGTTGCT 262937
|||||||||| |||||| || | | | ||| |||| ||| | || ||| | ||
Sbjct 84915 TGGGACTGGGCCGCACTCAAGGAGAAGATCGCGA-AGCACGGCGTACGGAACAGTCTCCT 84857
Query 262938 CGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGA 262997
||||||| |||||| ||||| |||| |||||||||| || |||| |||| || | ||
Sbjct 84856 GGTGGCGCCCATGCCAACGGCATCGACAGCGCAGATCCTAGGAAACAACGAGTCGATGGA 84797
Query 262998 GGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045
| |||| |||||||||| |||||||||||||| ||||||||
Sbjct 84796 GCCGTACACGTCGAACATCTACAGTCGCCGCGTGCTCTCTGGCGACTT 84749
>seq6232
Length=54526
Score = 109 bits (120), Expect = 8e-18
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 2133537 GCCCTCTTTGACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCC 2133596
||| | || ||||||| ||||||||||| |||||||| || || || ||||||
Sbjct 29607 GCCGTTTTCGACGAGGACCACGACGAGATGGTCGTTGTGCGCGACATCGAGTTCTTCTCC 29548
Query 2133597 ATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCG 2133656
| || ||||| ||||| |||| || |||||||||| ||| | |||||| |||||
Sbjct 29547 CTCTGTGAGCATCACCTCGTGCCTTTCATCGGCAAGGTGCACATCGGCTACTTGCCCAAC 29488
Query 2133657 GGCAAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTC 2133716
|||||| |||| |||||||| | | ||| ||||||| ||||| | ||| ||
Sbjct 29487 AAGAAGATCCTCGGCTTGAGCAAGCTGGCCCGCGTCGTCGAGATGTTCGCGCGCCGTCTC 29428
Query 2133717 CAAGTACAGGAGGCACTCAC 2133736
|| || |||||| |||||
Sbjct 29427 CAGGTCCAGGAGCGTCTCAC 29408
>seq6320
Length=115745
Score = 96.9 bits (106), Expect = 5e-14
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 332927 TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCC 332986
|||||||| ||||| || || || || || | | ||||||||| ||| |||||
Sbjct 79700 TTGCAGGCGAGGGCGAAGCGGGTGGTCTTACTGTAGACCTCCATGGTCCTCCGCAGGGCT 79759
Query 332987 TGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046
|| || || | || | || ||| |||||||| ||||||||||||||||| |||
Sbjct 79760 TGCTGCGCTCCTTCGGTCATGCTGTCCGCCTCGTCCAGGATGATGATCTTGTGCATCCCA 79819
Query 333047 TGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACG 333106
| ||||| || | || ||| || ||||| | || || |||||||| |
Sbjct 79820 TTGGGCAGGGTGACTTTGCTCTGCGCGAAGTTCTTGATCTTGTTACGGACGACGTCGATT 79879
Query 333107 CCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTC 333144
|| || |||||||||||||| ||||| || ||||| ||
Sbjct 79880 CCACGATCGTCCGACGCGTTCAGTTCCAGGACGGCGTC 79917
>seq2592
Length=18905
Score = 96.9 bits (106), Expect = 5e-14
Identities = 183/261 (70%), Gaps = 14/261 (5%)
Strand=Plus/Minus
Query 1456057 TACGTCAAGGACCCGGTCGAGAA-GGACCAC-CTCTTTCGCGCCATCGACACGGTGCCGT 1456114
||||||| |||||| || ||| ||| ||| ||||| |||||| | | | ||||
Sbjct 15322 TACGTCACGGACCCC--CGGGAACGGAACACGCTCTTCAACGCCATACAAGAGTTCCCGT 15265
Query 1456115 CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACA 1456171
| | ||| |||||||||||||| || |||||| ||||| | | ||||
Sbjct 15264 GCATCAAGAAGAAGGCCGACTGGGCACTGCGCTGGATCGGCGACAAGAACG-CCTC---- 15210
Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230
||| | || | ||| ||| ||||| || || |||||||| ||||| || ||
Sbjct 15209 CTTCGGAACCCGCGTGATCGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGATCCTT 15150
Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290
| ||||||||| |||||||||||||||||||| |||||||| | || | |||||||
Sbjct 15149 CGCCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGG-CCTCACCCACAGCAACG 15091
Query 1456291 AATTTATCAGTCGCGACGAAG 1456311
|| | ||| || |||||||
Sbjct 15090 AACTCATCTCCCGGGACGAAG 15070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177086846696620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |