Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4842 168 1e-35 seq1619 158 2e-32 seq7501 145 1e-28 seq7237 111 2e-18 seq6232 109 8e-18 seq6320 96.9 5e-14 seq2592 96.9 5e-14 >seq4842 Length=3430 Score = 168 bits (186), Expect = 1e-35 Identities = 172/223 (77%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 ||||| |||||||||||||| || || |||| || |||| | ||| ||| Sbjct 3044 GTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCGATGAGCATC 2991 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 |||||||| || ||||||||| | |||| ||||||| | ||||||| ||||| || Sbjct 2990 ATGAACTCCTTCGTCAACGACGTCTTCGAGCGCATCGCCGGCGAGGCCTCGCGCCTCGCC 2931 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || |||||| ||| ||| ||| | | |||||||||||||||||||| ||||| ||| Sbjct 2930 CACTACAACAAACGCTCCACCATCTCCTCCCGCGAGATCCAGACCGCCGTCCGCCTCATC 2871 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | ||| |||||||||| ||||||||||||||||||||||| Sbjct 2870 CTCCCCGGAGAACTGGCCAAGCACGCCGTCTCCGAGGGCACCA 2828 >seq1619 Length=706 Score = 158 bits (174), Expect = 2e-32 Identities = 275/395 (70%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 2133440 GCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCG 2133499 |||||| ||||| |||||||| |||| ||| | ||||||||||||| | | | Sbjct 283 GCGCGAAGGCCTGCTGGACACGCCCAAGCGTGCGGCCAAGGCCATGCAATACCTGTGTCA 342 Query 2133500 CGGCCATC-GCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGG 2133558 |||| ||| ||| || ||| | | |||| ||| || || || ||| || | Sbjct 343 CGGCTATCAGCA-GAGCCTAGAGCAGATCGTCAACGGTGCACTGTTCGACTCGGACAACG 401 Query 2133559 ACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGC 2133618 |||||||||||| || ||||| || || | | || ||||||||||||||||||||| Sbjct 402 ACGAGATGGTGATCGTACGCGACATCGAGCTGTATTCGTTGTGCGAGCACCACCTGCTGC 461 Query 2133619 CCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCA 2133678 | || ||||||||||| ||||| | |||| | ||| |||||||| | | || ||| | Sbjct 462 CGTTCATCGGCAAGGCGCACGTTGCCTACATCCCCACGGGCAAGGTGCTGGGGCTGTCGA 521 Query 2133679 AGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACGC 2133738 | | ||||||| ||||||||||| | ||| | || | |||||| || || | Sbjct 522 AAGTGGCGCGCATTGTCGACATGTTCGCGCGCCGGCTGCAGATCCAGGAGAACCTGACAC 581 Query 2133739 GCCAGATCGCCGAGAGCGTGAGCC-AGGTTACGGGCGCGCGCGGCGTCGGCGTCGTCCTC 2133797 | ||| | |||||| ||| ||| |||| || || |||||| | || || || Sbjct 582 GACAGGTGGCCGAG-GCGATTGCCGAGGTGACCCATGCCGCCGGCGTGGCAGTGGTGATC 640 Query 2133798 GAGGGCCTGCACATGTGCGTGTGTATGCGCGGCGT 2133832 |||| | |||||||||| || |||||||| || Sbjct 641 GAGGCCAAGCACATGTGCATGATGATGCGCGGGGT 675 >seq7501 Length=6922 Score = 145 bits (160), Expect = 1e-28 Identities = 139/178 (78%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||||| ||||||||||| || ||||||||| | |||| ||||||| | ||| Sbjct 5 AAGGCCATGTCTATCATGAACTCCTTCGTCAACGACGTATTCGAGCGCATCGCCGGCGAA 64 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| ||||| || | || |||||||||| |||||| | ||||| ||||||||| Sbjct 65 GCCTCGCGCCTCGCACACTACAACAAGCGCTCGACGATCTCGTCCCGCGAAATCCAGACC 124 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| ||||| ||| | | || ||||| || | |||||||||||||||||| |||| Sbjct 125 GCCGTCCGCCTCATCCTCCCTGGTGAACTCGCGAAGCACGCCGTCTCCGAGGGAACCA 182 >seq7237 Length=102105 Score = 111 bits (122), Expect = 2e-18 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 262106 ATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAAC 262165 || ||| || | || ||||| |||||||| || |||||| |||||||||||||| |||| Sbjct 85491 ATCGTCACGTCGCAGATCGAAACCGGCACTCCTTACATGCTCTACAAGGACGCCTGCAAC 85432 Query 262166 CTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAACCTGTGCACCGAGAT 262224 | || ||||||| ||||||| || || | | || | ||||||| ||||||||||| Sbjct 85431 CAGAAGTCCAACCAGAAGAACCTCGGGACGATCA-AGTGCTCCAACCTCTGCACCGAGAT 85373 Query 262225 CGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCTCTCGAGCGTGGCCCTG 262282 |||||||| || ||||| || | | ||||||||||| | ||| |||||| Sbjct 85372 CGTCCAGTACTCTTCGCCTGAAGAAGTAGCCGTGTGCAACCTGGCCTCCGTCGCCCTG 85315 Score = 98.7 bits (108), Expect = 1e-14 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTT-CGACAGCATGGCCTGCGCAACTCGTTGCT 262937 |||||||||| |||||| || | | | ||| |||| ||| | || ||| | || Sbjct 84915 TGGGACTGGGCCGCACTCAAGGAGAAGATCGCGA-AGCACGGCGTACGGAACAGTCTCCT 84857 Query 262938 CGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGA 262997 ||||||| |||||| ||||| |||| |||||||||| || |||| |||| || | || Sbjct 84856 GGTGGCGCCCATGCCAACGGCATCGACAGCGCAGATCCTAGGAAACAACGAGTCGATGGA 84797 Query 262998 GGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045 | |||| |||||||||| |||||||||||||| |||||||| Sbjct 84796 GCCGTACACGTCGAACATCTACAGTCGCCGCGTGCTCTCTGGCGACTT 84749 >seq6232 Length=54526 Score = 109 bits (120), Expect = 8e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 2133537 GCCCTCTTTGACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCC 2133596 ||| | || ||||||| ||||||||||| |||||||| || || || |||||| Sbjct 29607 GCCGTTTTCGACGAGGACCACGACGAGATGGTCGTTGTGCGCGACATCGAGTTCTTCTCC 29548 Query 2133597 ATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCG 2133656 | || ||||| ||||| |||| || |||||||||| ||| | |||||| ||||| Sbjct 29547 CTCTGTGAGCATCACCTCGTGCCTTTCATCGGCAAGGTGCACATCGGCTACTTGCCCAAC 29488 Query 2133657 GGCAAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTC 2133716 |||||| |||| |||||||| | | ||| ||||||| ||||| | ||| || Sbjct 29487 AAGAAGATCCTCGGCTTGAGCAAGCTGGCCCGCGTCGTCGAGATGTTCGCGCGCCGTCTC 29428 Query 2133717 CAAGTACAGGAGGCACTCAC 2133736 || || |||||| ||||| Sbjct 29427 CAGGTCCAGGAGCGTCTCAC 29408 >seq6320 Length=115745 Score = 96.9 bits (106), Expect = 5e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 332927 TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCC 332986 |||||||| ||||| || || || || || | | ||||||||| ||| ||||| Sbjct 79700 TTGCAGGCGAGGGCGAAGCGGGTGGTCTTACTGTAGACCTCCATGGTCCTCCGCAGGGCT 79759 Query 332987 TGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046 || || || | || | || ||| |||||||| ||||||||||||||||| ||| Sbjct 79760 TGCTGCGCTCCTTCGGTCATGCTGTCCGCCTCGTCCAGGATGATGATCTTGTGCATCCCA 79819 Query 333047 TGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACG 333106 | ||||| || | || ||| || ||||| | || || |||||||| | Sbjct 79820 TTGGGCAGGGTGACTTTGCTCTGCGCGAAGTTCTTGATCTTGTTACGGACGACGTCGATT 79879 Query 333107 CCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTC 333144 || || |||||||||||||| ||||| || ||||| || Sbjct 79880 CCACGATCGTCCGACGCGTTCAGTTCCAGGACGGCGTC 79917 >seq2592 Length=18905 Score = 96.9 bits (106), Expect = 5e-14 Identities = 183/261 (70%), Gaps = 14/261 (5%) Strand=Plus/Minus Query 1456057 TACGTCAAGGACCCGGTCGAGAA-GGACCAC-CTCTTTCGCGCCATCGACACGGTGCCGT 1456114 ||||||| |||||| || ||| ||| ||| ||||| |||||| | | | |||| Sbjct 15322 TACGTCACGGACCCC--CGGGAACGGAACACGCTCTTCAACGCCATACAAGAGTTCCCGT 15265 Query 1456115 CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACA 1456171 | | ||| |||||||||||||| || |||||| ||||| | | |||| Sbjct 15264 GCATCAAGAAGAAGGCCGACTGGGCACTGCGCTGGATCGGCGACAAGAACG-CCTC---- 15210 Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| | || | ||| ||| ||||| || || |||||||| ||||| || || Sbjct 15209 CTTCGGAACCCGCGTGATCGCCTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGATCCTT 15150 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 | ||||||||| |||||||||||||||||||| |||||||| | || | ||||||| Sbjct 15149 CGCCGCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGG-CCTCACCCACAGCAACG 15091 Query 1456291 AATTTATCAGTCGCGACGAAG 1456311 || | ||| || ||||||| Sbjct 15090 AACTCATCTCCCGGGACGAAG 15070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177086846696620