Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq4924 91.5 1e-13
seq6434 86.0 5e-12
>seq4924
Length=20857
Score = 91.5 bits (100), Expect = 1e-13
Identities = 130/183 (71%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107
||||||||||||||| || ||| | |||||||| || || || | || ||||||||
Sbjct 331 GATGGCATTGCCACCGTGCCATACCATGTGTCAGTTCTATGTAAGCGACGGGGAACTGTC 390
Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167
|||||| | || || | || || || |||| || || || || || ||||| || ||
Sbjct 391 GTGTCAACTATACCAGCGTTCCGGCGATATGGCCCTTGGAGTGCCCTTCAACATCGCCAG 450
Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGT 41227
|||| ||| ||||| | ||||| || || || || ||||| ||||| |||||
Sbjct 451 CTATGGTCTCCTCACTCACATGATCGCGCATGTGACTGGCTTAAA----GGTGAGTTTGT 506
Query 41228 TCA 41230
||
Sbjct 507 CCA 509
>seq6434
Length=27939
Score = 86.0 bits (94), Expect = 5e-12
Identities = 120/167 (72%), Gaps = 6/167 (4%)
Strand=Plus/Minus
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTG-T 19607
|||||||| || || | || ||| | ||||| ||||| ||||| | || ||| | |
Sbjct 14653 TTGCACATGATCATCTTCGACGAAATCGACGCGATCTGCAAGCAGCGTGGATCTATGGCT 14594
Query 19608 AAAT-----GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
|| || || |||||||| || ||||||||||| ||||| || | ||||||||
Sbjct 14593 GGATCGTCCGGCGTCCATGACACCGTCGTCAATCAACTTCTGTCGAAGATGGACGGTGTG 14534
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709
| |||||||| || || | |||||||| ||||| || || | |||
Sbjct 14533 GAACAACTGAACAACATCCTTGTTATTGGAATGACCAACAGGCGGGA 14487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397419621597550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |