Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5063 107 2e-18 seq2066 107 2e-18 seq4834 93.3 4e-14 >seq5063 Length=4177 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| | |||| | || ||||| || || ||| Sbjct 2241 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCCTCGAGTTGCTTTCCG 2300 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | ||||||||||| || || | || ||||| || ||||||| || Sbjct 2301 GCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTG 2360 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | |||||| ||||| || || || | ||||| || ||||| Sbjct 2361 ACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTGAGAGTC 2420 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||||||||| Sbjct 2421 TTCACAAAGATTTGCAT 2437 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || ||||| || || ||| Sbjct 2617 GTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCG 2676 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | |||||||||||| || || | || || || || ||||||| || Sbjct 2677 GCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTG 2736 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | |||||| ||||| || || || | ||||| ||||| || Sbjct 2737 ACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCGGTCAGGGTC 2796 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 2797 TTCACGAAGATTTGCAT 2813 >seq2066 Length=2850 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | | || ||||||||||||| || ||| Sbjct 874 GTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCG 933 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| || || ||||| || || | ||||| || || ||||||| || Sbjct 934 GCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTG 993 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | |||||| ||||| ||||| || | ||||| ||||| || Sbjct 994 ACGTTCTCAATGGTGTCGGAGGCTTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGGGTC 1053 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 1054 TTCACGAAGATCTGCAT 1070 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| || |||||||| || |||| | || |||||||| || ||| Sbjct 1463 GTCGATTCCTTTTGGATGTTGTAGTCCGACAATGTGCGGCCATCCTCGAGCTGCTTTCCG 1522 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||||||||| || || | || || || || ||||||| || Sbjct 1523 GCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1582 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | |||||| ||||| || || || | |||||||||| || Sbjct 1583 ACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTTGCCCGTCAAGGTC 1642 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 1643 TTCACGAAGATCTGCAT 1659 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| || | |||| | || ||| Sbjct 1946 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCG 2005 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || |||||| | || | |||||||||||| || || | || || || || | Sbjct 2006 AGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGG 2065 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | |||||| ||||| || || || | ||| Sbjct 2066 ATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACTTCGAGGGTGATCGTCTTG 2125 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||||| || ||||| ||||| ||||| Sbjct 2126 CCCGTCAAGGTCTTCACGAAGATCTGCAT 2154 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| | | | || ||||||||||||| || ||| Sbjct 1235 GTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCG 1294 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| || || ||||| || || | ||||| || || ||||||| || Sbjct 1295 GCGAAGATGAGGCGTTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTG 1354 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | || || ||||| || || || | ||||| ||||| || Sbjct 1355 ACGTTCTCGATGGTATCCGAAGCCTCCACTTCGAGGGTGATCGTCTTGCCGGTCAGGGTC 1414 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 1415 TTCACGAAGATTTGCAT 1431 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || |||||||| | |||| | || ||| Sbjct 2 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCG 61 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || |||||| | ||||| ||||||||||| || || | || || || || Sbjct 62 AGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGTCTTGA 121 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | ||||| ||||| |||||||| | ||| Sbjct 122 ATCTTCGCCTTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTTATCGTCTTG 181 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || ||||| ||||||||||| Sbjct 182 CCAGTCAAGGTCTTCACGAAGATTTGCAT 210 >seq4834 Length=88581 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || ||||| |||||||| | | || |||| || Sbjct 21131 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAAAGAGTACGGCCGTCCTCA 21190 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| ||||| | ||||| |||||||| || || || | || || ||||| Sbjct 21191 AGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGA 21250 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | ||||| ||||| || || || | || Sbjct 21251 ATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTCTTT 21310 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || |||||||||||||| Sbjct 21311 CCGGTGAGCGTCTTGACAAAGATTTGCAT 21339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424895506551120