Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_027995.1
Length=41666
Score E
Sequences producing significant alignments: (Bits) Value
seq5910 105 2e-18
seq5432 89.7 1e-13
>seq5910
Length=978
Score = 105 bits (116), Expect = 2e-18
Identities = 184/265 (69%), Gaps = 6/265 (2%)
Strand=Plus/Minus
Query 9138 ATTGCGCCCAGGCTCACCAGGTTGCGCAGGTACGCGTTCACGCCTTCAATCACGTCATTG 9197
|| |||||| || | |||| ||||| | |||| | || |||||| ||||||| |||
Sbjct 645 ATCGCGCCCTGGGCCTTGAGGTCGCGCATGAACGCCTGCAGGCCTTCGGTCACGTCCTTG 586
Query 9198 ACGTATTGTTTGGTGATGCCACGGTCTACGGCCCACAGGTGTGCACGCAGCAGACT---G 9254
||||| |||||| |||||| || ||||| ||||| || || ||| | |
Sbjct 585 ACGTAGGTGGCGGTGATCGAACGGTCGACTGCCCATT--TGTGCCCGTAG-AGAATCGCG 529
Query 9255 TCATTGATGATGTCAGCCGTGCGAACCACGCACAGGAACGCCCATTTCTGATCGCTGGAA 9314
|| | | |||||| ||||| || | | ||| ||||| ||| | ||||||
Sbjct 528 TCCATCACGATGTCCATGGTGCGCACGCGGGTGACGAAGGCCCACTTCGGGTCGCTGCTC 469
Query 9315 CAGGTGCGGTTGCCCCACAGGCGGAAACCGTCCTGGCGAATGATGGTGGTGACTTCGTTT 9374
||||||||||||||||||||| | ||||| | ||| ||||||||||||| | |
Sbjct 468 AGGGTGCGGTTGCCCCACAGGCGATAGCCGTCATCGCGGATGATGGTGGTGATGTTGGCG 409
Query 9375 TCATTCAGCAGGTTTGCACGGCTGG 9399
| || |||||||| || |||| ||
Sbjct 408 TTGTTGAGCAGGTTGGCGCGGCAGG 384
>seq5432
Length=1936
Score = 89.7 bits (98), Expect = 1e-13
Identities = 184/273 (67%), Gaps = 3/273 (1%)
Strand=Plus/Minus
Query 41199 GGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATC 41258
||| | || || ||| | || || |||| | |||| |||||| | || || ||| |
Sbjct 451 GGCCAGGACCCTGAAGTTCGCCACCTGCCCAACGGCAACGCGGTGACCAACCTCAGCCTG 392
Query 41259 GCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGG 41318
||||| | || |||| || || |||||| ||||| || | || || |||
Sbjct 391 GCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGCGTACCGAGTGG 332
Query 41319 CACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGT 41378
||||| ||| || ||||| ||| | || || ||||| |||| ||||||||||| |||
Sbjct 331 CACCGTGTTTCGATGTTCGGCAAGGTTGCCGAGATTGCCGGCGAGTACCTGCGCAAGGGT 272
Query 41379 AGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTT 41438
|||||| ||| || |||| |||| || || | || ||| ||| ||| |
Sbjct 271 TCGCAGGTGTACATCGAGGGCAAGCTGCAGACCCGCGAGTG---GGAAAAGGACGGCATC 215
Query 41439 GATCGCTACACCACTGAAATCAACGTGGGCATG 41471
| || |||||||| || |||| ||| | ||||
Sbjct 214 AAGCGTTACACCACCGAGATCATCGTCGACATG 182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133197720201360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |