Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4628 127 3e-24 seq7237 91.5 2e-13 >seq4628 Length=2726 Score = 127 bits (140), Expect = 3e-24 Identities = 354/530 (67%), Gaps = 16/530 (3%) Strand=Plus/Plus Query 13906 CTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGC 13965 ||| |||| ||||| |||| ||||||||| |||||||| | ||| ||||| | Sbjct 1357 CTCGTTGACCAGGTTGGCCAGGTCGGCACCGGAGAAGCCGGGCGTACCACGGGCGATCAC 1416 Query 13966 GTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGCGTGGACACCC--AAAATCTTC 14023 | | ||||| | ||| | | | | |||| | || || |||| | ||||| | Sbjct 1417 GGCAGGGTTCACGTTGTCGCCGATCGGC--GTCTTGCGCATGTGCACCTTGAGAATCTGC 1474 Query 14024 TCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGG 14083 |||||||| || | ||| ||| |||| | | || || || || ||||| || Sbjct 1475 TCGCGACCACGGATGTCGGGCAGGCCCACGACCACTTGGCGGTCGAAACGGCCTGGACGC 1534 Query 14084 AGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTC 14143 || | || |||||| | || ||||| || || ||||| || | |||||| ||| Sbjct 1535 AGCAACGCAGGGTCAAGCACGTCCGGACGGTTGGTAGCGGCGATCACGATGATGCC-GTC 1593 Query 14144 --TCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCAT 14201 || || || ||||| |||||||| || | || |||| ||| || ||||| || | Sbjct 1594 GTTCATT-TCGAAGCCGTCCATCTCCACCAGCAACTGGTTGAGGGTCTGCTCGCGCTCGT 1652 Query 14202 CATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGAT 14259 ||| || | ||| || || | || || |||||||||||| ||||| ||||| Sbjct 1653 CATGACCA--CCGCCCATGCCGGCGCCACGGTGGCGACCGACGGCGTCGATTTCGTCGAT 1710 Query 14260 GAAAACGATACATGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGG 14318 ||| | ||| || || | ||| || | || | || || || || || | ||| Sbjct 1711 GAAGATGATGCACGGCGCGTGCTTCTTGGCCTGCT-CGAACATGTCACGTACACGGCTGG 1769 Query 14319 CACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACG 14377 ||||||||||||| ||||| || || || | || ||||| || | || ||| || || Sbjct 1770 CACCGACACCCACGAACATTTCAACGAAGTCGGAACCGGAA-ATGGTGAAGAACGGCACC 1828 Query 14378 TTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | |||||||||||||| ||| || |||||||| || || || || Sbjct 1829 TTGGCCTCACCCGCGATGGCCTTGGCCAGCAGGGTCTTACCGGTACCGGG 1878 >seq7237 Length=102105 Score = 91.5 bits (100), Expect = 2e-13 Identities = 209/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 119310 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCA 119369 || || || || || |||| ||||| | ||||||| | ||| | | |||| || Sbjct 86017 CCGATTCCGCCGGCGGACTTGGAGATCAGAGCGCACTGCCAGAGGGTCTTGAAGATGCCG 86076 Query 119370 TCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTA 119429 ||||| ||||| | | | | || ||||||||| ||| || ||| || || Sbjct 86077 TCGATGGAGTCGTCACTCATGGTGAGCAGGAAGCAGGAGCTCATCTGGGGCTTGCAGGTG 86136 Query 119430 CCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAG 119489 || ||||||||||| || || | || ||| ||||| | | |||||| || |||| Sbjct 86137 CCGGCGTTGAAGAGCGTCGGCGAGGCATGGGTGAACCACCGCTCGGACATGAGGTTGTAG 86196 Query 119490 GTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATG 119549 || || | | ||||| ||||||||| ||| || |||| | || ||||| | ||| Sbjct 86197 GTTTCGATGGCGGCGTTGATGTCTTCCTTGTGGATTCCGACGGCCACGCGCATCAGCATA 86256 Query 119550 TATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTC 119609 | ||||||| ||||| | | || |||| | | ||||||| ||||| |||| Sbjct 86257 TGTTGGGGTCGTTCCACGACCTTCCCGTCGATCTTGAGGAGGTAGGAGCGCTCCAGGGTC 86316 Query 119610 TTGAGACCAAAATAG 119624 |||| || || ||| Sbjct 86317 TTGAAGCCGAAGTAG 86331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618377144395600