Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4834 143 8e-29 seq2066 140 1e-27 seq5063 136 1e-26 seq71 122 3e-22 seq6307 93.3 1e-13 seq48 87.8 5e-12 seq6645 86.0 2e-11 >seq4834 Length=88581 Score = 143 bits (158), Expect = 8e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 ||| || |||||||| | | || || | || ||||||||||| || ||||| || || Sbjct 21106 TTAAATTCCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTA 21165 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || | || || || || ||||| |||||||| |||||||| || || || || || Sbjct 21166 GTCTGAAAGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTC 21225 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||||| || ||||| ||||| ||||| || || || || || || || | || || | Sbjct 21226 GGGAGGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGC 21285 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || || | ||||||||||| || || || ||||| || ||||| Sbjct 21286 TTCGACTTCGAGGGTGATGGTCTTTCCGGTGAGCGTCTTGACAAAGATTTGCAT 21339 Score = 111 bits (122), Expect = 5e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||| ||||||||||| || || || || || || Sbjct 21701 CATACCACCACGAAGACGGAGTACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 21760 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || |||| ||||||||||| || ||||| || || || || || ||||| ||||| Sbjct 21761 GGACAAAGTTCTGCCATCTTCAAGCTGCTTTCCGGCGAAAATGAGGCGCTGCTGGTCAGG 21820 Query 140627 AGGAATTCCTTCTTTATCCTGAAT 140650 ||| || ||||| ||||| ||||| Sbjct 21821 AGGGATGCCTTCCTTATCTTGAAT 21844 Score = 100 bits (110), Expect = 9e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || ||||| || || ||||| || ||||| || ||||| || |||||||| ||| Sbjct 22924 TTACCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGAATCTTA 22983 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || || || || || | || || | ||||| ||||| || | ||||||||||| Sbjct 22984 GCCTTGACGTTTTCGATGGTGTCGGACGCCTCAACCTCAAGGGTGATGGTCTTTCCGGTA 23043 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || |||||||| Sbjct 23044 AGAGTTTTGACGAAGATCTGCAT 23066 >seq2066 Length=2850 Score = 140 bits (154), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || | || ||||| || ||||| || ||||| || || || || | Sbjct 836 TTTGCATTCCACCGCGAAGTCGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGT 895 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | ||||| || ||||| || || ||||| || ||||| || |||||||||| Sbjct 896 AGTCCGAGAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGAT 955 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || ||||| || || || || || || || || || || ||||| | || || | Sbjct 956 CTGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGG 1015 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || || | ||||| ||||| || || || || || |||||||| Sbjct 1016 CTTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1070 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 || ||||| | || || || || ||||||||||| || || || || || || || || Sbjct 1205 CCTCCACGGAGTCGAAGGACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAG 1264 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | ||||| || ||||| || || ||||| || ||||| || ||||||||||| || || Sbjct 1265 AGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGG 1324 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||| || || ||||| || || || || || || || || | ||| || | || ||| Sbjct 1325 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCACT 1384 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | ||||| ||||| || || || || || || |||||| Sbjct 1385 TCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 1432 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | ||||| | || || || ||||| || || || || || || Sbjct 1924 CATTCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1983 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || ||||| ||||| || ||||| | ||| || ||||| || Sbjct 1984 CGACAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGG 2043 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||||||||| || ||||| || || || || || || || || | || || | ||| Sbjct 2044 GGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTC 2103 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||| || || | || || || || |||||||| Sbjct 2104 GACTTCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 2154 >seq5063 Length=4177 Score = 136 bits (150), Expect = 1e-26 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || |||||||| ||||| || || || || || || || | || ||||| ||| Sbjct 1683 AGAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCGTCT 1742 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || |||||||| || || ||||| || || ||| Sbjct 1743 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGTGGGATTCCCTCCTTGTCC 1802 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || ||||| ||||| | || || | ||| |||||||| || | ||| Sbjct 1803 TGAATCTTGGCCTTCACATTTTCAATGGTGTCCGAGGCTTCGACTTCAAGAGTGATGGTC 1862 Query 140706 TTTCC 140710 ||||| Sbjct 1863 TTTCC 1867 Score = 136 bits (150), Expect = 1e-26 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || || |||||||| || || || || || || || | || || ||||| Sbjct 2226 AGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCATCC 2285 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || ||||| ||||| || ||||| | || || ||||| || |||||||||||||| ||| Sbjct 2286 TCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGATCTGGGGGAATTCCTTCTTTGTCC 2345 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || |||| || || | ||| ||||| || || | ||| Sbjct 2346 TGGATCTTGGCCTTGACGTTCTCGATCGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTC 2405 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| || || || ||||| || |||||| Sbjct 2406 TTGCCGGTGAGAGTCTTCACAAAGATTTGCATT 2438 Score = 122 bits (134), Expect = 3e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || |||||||| || || || || || || || || || | || || ||||| Sbjct 2602 AGCACCAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 2661 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || ||||| ||||| || ||||| | ||| || ||||| || ||||||||||| || ||| Sbjct 2662 TCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGAATTCCTTCCTTGTCC 2721 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || || | || || | ||| ||||| || || | ||| Sbjct 2722 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATCGTC 2781 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || || || || ||||| Sbjct 2782 TTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 2813 >seq71 Length=89762 Score = 122 bits (134), Expect = 3e-22 Identities = 241/356 (68%), Gaps = 3/356 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||||||| | || | |||||| | | || ||||||||||| |||||| | ||| | Sbjct 9700 CCCGAAGAAGTGTCTGCCATGGTTCTTGGAAAGATGAAGGAAATCGCTGAATCGTATCTC 9759 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | ||| | | || ||| | ||||| || || || || || |||||||||||| Sbjct 9760 GGAAAGGAAGTCAAGCACGCCGTTGTCACTGTGCCTGCTTACTTCAACGATGCCCAGCGT 9819 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || |||||| || || || ||| | | || || || ||| Sbjct 9820 CAGGCCACCAAGGATGCCGGTGTCATTGCTGGTTTGAACGTTGTTCGTATCATCAACGAA 9879 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || || ||||| || ||||| || || ||||| || || ||| ||| || || Sbjct 9880 CCTACCGCTGCCGCTATTGCCTACGGCCTTGACAA---GAAGGACGGAGAGCGCAACATC 9936 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || | || ||||| || |||||||| || || || || || || || | || | ||| Sbjct 9937 CTCGTGTTCGATTTGGGAGGTGGTACCTTCGACGTCTCTCTCCTCACGATCGACAATGGA 9996 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 | || || ||| || || || ||||| || | ||||| ||||| || || Sbjct 9997 GTCTTCGAGGTTCTTGCTACCAACGGAGATACTCACTTGGGTGGCGAAGACTTCGA 10052 >seq6307 Length=70653 Score = 93.3 bits (102), Expect = 1e-13 Identities = 220/330 (67%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||||| ||| || || | | ||| | || | || ||||| || || Sbjct 14820 AAGATGAAGGAAACTGCCGAGGCCTTCCTGGGTAGCATTGTCAAGGACGCTGTCATCACC 14761 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || || ||||||| || || || || || || |||||| Sbjct 14760 GTGCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTGCCATTGCT 14701 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || ||||| |||| || || || || |||||||| || || || || || | Sbjct 14700 GGTCTCAACGTTCTCCGAATCATCAACGAGCCGACTGCTGCCGCTATCGCGTACGGTTTG 14641 Query 349742 GATAAAATGAGTGACCA-AGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 || || | | | || ||| || | || || || ||| | || || ||||| || Sbjct 14640 GACAAGAAG-GCCACTGGAGAGCGCAACGTGCTCATCTTCGATCTTGGAGGCGGTACCTT 14582 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 ||||| || | || || | || || ||||| || ||||| || | ||||| || || Sbjct 14581 CGATGTTTCCATCCTGACCATCGAGGACGGAATCTTCGAAGTCAAGTCTACTGCCGGAGA 14522 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAA 349890 || ||||||||||| || || || || || Sbjct 14521 CACTCATCTTGGTGGTGAGGACTTCGACAA 14492 >seq48 Length=185442 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||||||| | || || || || ||||||| || | ||| ||| || Sbjct 28848 GCTATTGGAATCGATCTGGGAACCACCTACAGCTGTGTTGGAGTGTACCAACATGGCCGA 28907 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || | |||||||||||||| |||| || ||||| || || || || ||||| Sbjct 28908 GTGGAGATCCTAGCAAATGATCAAGGCAACAAGACGACGCCGTCCTATGTCGCTTTTACA 28967 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCA 349356 ||||||||||| | || || ||| | || || |||| Sbjct 28968 GAAACTGAGCGCCTCATAGGAGATCCCGCTAAGGATCA 29005 >seq6645 Length=21841 Score = 86.0 bits (94), Expect = 2e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || || ||||| || || |||||||| || || || || || || || || || || Sbjct 8967 TTACCGGCGAAGATAAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCTTGGATCTTG 9026 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| || |||| ||||| | || || || || || | ||||| || || Sbjct 9027 GCCTTCACATTCTCGATCGTGTCAGAGGCCTCGACCTCGAGCGTGATGGTCTTACCCGTG 9086 Query 140715 AGTGTTTTTACAAAAATCTGCATTA 140739 || ||||| || ||||||||||||| Sbjct 9087 AGGGTTTTGACGAAAATCTGCATTA 9111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515108599380530