Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7237 116 4e-21 seq2592 84.2 2e-11 >seq7237 Length=102105 Score = 116 bits (128), Expect = 4e-21 Identities = 197/286 (69%), Gaps = 16/286 (6%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || || ||| |||| || || |||||||| || || | || |||||| | Sbjct 86171 TTCACCCATGCCTCGCCGACGCTCTTCAACGCCGGCACCTGCAAGCCCCAGATGAGCTCC 86112 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 ||||||||| | | |||| || ||||| ||||||||||||| | |||| ||| | || Sbjct 86111 TGCTTCCTGCTCACCATGAGTGACGACTCCATCGACGGCATCTTCAAGACCCTCTGGCAG 86052 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG------TATCCACTGC--TCGAACG 53444 || || | |||||||||| | || || ||||| | |||||||| |||| | Sbjct 86051 TGCGCTCTGATCTCCAAGTCCGCCGGCGGAATCGGCCTCAATGTCCACTGCATTCGAGCC 85992 Query 53445 TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 || ||| || | ||| ||||| |||||| | || | ||| || | |||| Sbjct 85991 TC--------CGGAACTCTCATCGCTGGGACCAACGGCACCTCCAACGGACTCATTCCTA 85940 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 |||| || |||| ||||||||| || || |||||| |||| || || Sbjct 85939 TGCTGCGGGTCTACAACAACACCGCTCGCTACGTCGACCAAGGAGG 85894 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| |||| ||| || || |||||||| |||||||| || ||||| || |||||| | Sbjct 84876 GGCGTACGGAACAGTCTCCTGGTGGCGCCCATGCCAACGGCATCGACAGCGCAGATCCTA 84817 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG 55587 || ||||||||| || | |||||||||||| | ||||||||| ||||| Sbjct 84816 GGAAACAACGAGTCGATGGAGCCGTACACGTCGAACATCTACAGTCGCCG 84767 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/220 (70%), Gaps = 16/220 (7%) Strand=Plus/Minus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 |||||||||||| ||||||| |||||||| ||||| | ||||| ||||||||| Sbjct 85828 TTCGCCATCTACATCGAGCCATGGCACGCGGACATCTTCGAGTT------CCTGCGTCTG 85775 Query 53630 AATCAGGGTGAC-------GAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGA 53681 || ||| || || ||| |||| || || || || ||| | || |||| Sbjct 85774 AA-GAGGAACACCGGATCGGAGGAGGAGCGCGCTCGCGATCTCTTCTAC-GGGCTCTGGA 85717 Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741 | || ||| | |||||| | || || | ||| ||||||||| ||| ||||| ||| Sbjct 85716 TCCCCGACTTGTTCATGGAGCGTGTCAAGGACGACAAGGAGTGGTCCCTCATGTGTCCGC 85657 Query 53742 ACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 || ||||||| || ||||| | | |||||| ||||||| Sbjct 85656 ACAAGTGCCCTGGACTCCACGACGCCTACGGAAAGGAGTT 85617 >seq2592 Length=18905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 74471 GACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAA 74530 ||||||||| || || ||||| |||||||| || | ||||||||||||||| ||||||| Sbjct 14725 GACCCGCTTCTCGAAGAAGTTCGTCTTCCCCTCTATCGAGATGTTCTCCATGAAGTCGAA 14784 Query 74531 AGGGTTCTTTGCACCGTAAAT 74551 |||||||| || |||||| Sbjct 14785 GGGGTTCTTCACATTGTAAAT 14805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547164630098000