Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq7237 116 4e-21
seq2592 84.2 2e-11
>seq7237
Length=102105
Score = 116 bits (128), Expect = 4e-21
Identities = 197/286 (69%), Gaps = 16/286 (6%)
Strand=Plus/Minus
Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332
|| || || ||| |||| || || |||||||| || || | || |||||| |
Sbjct 86171 TTCACCCATGCCTCGCCGACGCTCTTCAACGCCGGCACCTGCAAGCCCCAGATGAGCTCC 86112
Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392
||||||||| | | |||| || ||||| ||||||||||||| | |||| ||| | ||
Sbjct 86111 TGCTTCCTGCTCACCATGAGTGACGACTCCATCGACGGCATCTTCAAGACCCTCTGGCAG 86052
Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG------TATCCACTGC--TCGAACG 53444
|| || | |||||||||| | || || ||||| | |||||||| |||| |
Sbjct 86051 TGCGCTCTGATCTCCAAGTCCGCCGGCGGAATCGGCCTCAATGTCCACTGCATTCGAGCC 85992
Query 53445 TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504
|| ||| || | ||| ||||| |||||| | || | ||| || | ||||
Sbjct 85991 TC--------CGGAACTCTCATCGCTGGGACCAACGGCACCTCCAACGGACTCATTCCTA 85940
Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|||| || |||| ||||||||| || || |||||| |||| || ||
Sbjct 85939 TGCTGCGGGTCTACAACAACACCGCTCGCTACGTCGACCAAGGAGG 85894
Score = 95.1 bits (104), Expect = 1e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537
||| |||| ||| || || |||||||| |||||||| || ||||| || |||||| |
Sbjct 84876 GGCGTACGGAACAGTCTCCTGGTGGCGCCCATGCCAACGGCATCGACAGCGCAGATCCTA 84817
Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCG 55587
|| ||||||||| || | |||||||||||| | ||||||||| |||||
Sbjct 84816 GGAAACAACGAGTCGATGGAGCCGTACACGTCGAACATCTACAGTCGCCG 84767
Score = 91.5 bits (100), Expect = 2e-13
Identities = 154/220 (70%), Gaps = 16/220 (7%)
Strand=Plus/Minus
Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629
|||||||||||| ||||||| |||||||| ||||| | ||||| |||||||||
Sbjct 85828 TTCGCCATCTACATCGAGCCATGGCACGCGGACATCTTCGAGTT------CCTGCGTCTG 85775
Query 53630 AATCAGGGTGAC-------GAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGA 53681
|| ||| || || ||| |||| || || || || ||| | || ||||
Sbjct 85774 AA-GAGGAACACCGGATCGGAGGAGGAGCGCGCTCGCGATCTCTTCTAC-GGGCTCTGGA 85717
Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741
| || ||| | |||||| | || || | ||| ||||||||| ||| ||||| |||
Sbjct 85716 TCCCCGACTTGTTCATGGAGCGTGTCAAGGACGACAAGGAGTGGTCCCTCATGTGTCCGC 85657
Query 53742 ACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781
|| ||||||| || ||||| | | |||||| |||||||
Sbjct 85656 ACAAGTGCCCTGGACTCCACGACGCCTACGGAAAGGAGTT 85617
>seq2592
Length=18905
Score = 84.2 bits (92), Expect = 2e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 74471 GACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAA 74530
||||||||| || || ||||| |||||||| || | ||||||||||||||| |||||||
Sbjct 14725 GACCCGCTTCTCGAAGAAGTTCGTCTTCCCCTCTATCGAGATGTTCTCCATGAAGTCGAA 14784
Query 74531 AGGGTTCTTTGCACCGTAAAT 74551
|||||||| || ||||||
Sbjct 14785 GGGGTTCTTCACATTGTAAAT 14805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547164630098000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |