Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq4924 134 1e-26
seq2290 102 7e-17
>seq4924
Length=20857
Score = 134 bits (148), Expect = 1e-26
Identities = 139/182 (76%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 29921 TGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAG 29980
||||||||||| || | || || || || || || ||||||| |||||||||
Sbjct 509 TGGACAAACTCACC----TTTAAGCCAGTCACATGCGCGATCATGTGAGTGAGGAGACCA 454
Query 29981 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA 30040
|||||||||||||| ||||| || || || |||| || || || | |||||| || |||
Sbjct 453 TAGCTGGCGATGTTGAAGGGCACTCCAAGGGCCATATCGCCGGAACGCTGGTATAGTTGA 394
Query 30041 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCC 30100
||||| || || |||||||| || || ||||||||||||| |||||||| || | |||
Sbjct 393 CACGACAGTTCCCCGTCGCTTACATAGAACTGACACATGGTATGGCACGGTGGCAATGCC 334
Query 30101 AT 30102
||
Sbjct 333 AT 332
Score = 100 bits (110), Expect = 2e-16
Identities = 117/158 (74%), Gaps = 4/158 (3%)
Strand=Plus/Minus
Query 29923 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29982
||||||||| || | || || || || || || ||||||| || || ||| ||
Sbjct 728 GACAAACTCACC----TTTAAGCCAGTCACATGTGCTATCATGTGGGTTAGAAGACCATA 673
Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042
|||||| ||||| ||||| || || || |||| || || || | |||||| | ||| ||
Sbjct 672 GCTGGCTATGTTGAAGGGCACTCCAAGGGCCATATCGCCGGAACGCTGGTACAACTGGCA 613
Query 30043 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGG 30080
||| || || || ||||| ||||| |||||||||||||
Sbjct 612 CGACAGTTCGCCATCGCTGACGTAGAACTGACACATGG 575
>seq2290
Length=1989
Score = 102 bits (112), Expect = 7e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013
|| |||||||||| || || |||| |||||||||||| || ||||| || || ||
Sbjct 903 TGGGCCATCATGTGGGTCAGCAGAGCGTAGCTGGCGATATTGAAGGGCACACCCAGGAAA 962
Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30073
|| ||| | | |||||||||||| || || |||| || ||| || || |||||
Sbjct 963 ATATCCGCACTGCGCTGGTAGAGCTGGCAGGACAGCTTGCCATCGGCTACATAGAACTGG 1022
Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133
||| ||||||||| || || |||||||| |||||| || ||||||||| |
Sbjct 1023 AACAGGGCGTGGCAAGGGGGCAGAGCCATCTGGCCCACATCCGCCACGTTCCAGGCCGAG 1082
Query 30134 ACGATGATGCG 30144
||||| | |||
Sbjct 1083 ACGATCAGGCG 1093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406273211170920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |