Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4924 134 1e-26 seq2290 102 7e-17 >seq4924 Length=20857 Score = 134 bits (148), Expect = 1e-26 Identities = 139/182 (76%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 29921 TGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAG 29980 ||||||||||| || | || || || || || || ||||||| ||||||||| Sbjct 509 TGGACAAACTCACC----TTTAAGCCAGTCACATGCGCGATCATGTGAGTGAGGAGACCA 454 Query 29981 TAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGA 30040 |||||||||||||| ||||| || || || |||| || || || | |||||| || ||| Sbjct 453 TAGCTGGCGATGTTGAAGGGCACTCCAAGGGCCATATCGCCGGAACGCTGGTATAGTTGA 394 Query 30041 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCC 30100 ||||| || || |||||||| || || ||||||||||||| |||||||| || | ||| Sbjct 393 CACGACAGTTCCCCGTCGCTTACATAGAACTGACACATGGTATGGCACGGTGGCAATGCC 334 Query 30101 AT 30102 || Sbjct 333 AT 332 Score = 100 bits (110), Expect = 2e-16 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 29923 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29982 ||||||||| || | || || || || || || ||||||| || || ||| || Sbjct 728 GACAAACTCACC----TTTAAGCCAGTCACATGTGCTATCATGTGGGTTAGAAGACCATA 673 Query 29983 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 |||||| ||||| ||||| || || || |||| || || || | |||||| | ||| || Sbjct 672 GCTGGCTATGTTGAAGGGCACTCCAAGGGCCATATCGCCGGAACGCTGGTACAACTGGCA 613 Query 30043 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGG 30080 ||| || || || ||||| ||||| ||||||||||||| Sbjct 612 CGACAGTTCGCCATCGCTGACGTAGAACTGACACATGG 575 >seq2290 Length=1989 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29954 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 30013 || |||||||||| || || |||| |||||||||||| || ||||| || || || Sbjct 903 TGGGCCATCATGTGGGTCAGCAGAGCGTAGCTGGCGATATTGAAGGGCACACCCAGGAAA 962 Query 30014 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30073 || ||| | | |||||||||||| || || |||| || ||| || || ||||| Sbjct 963 ATATCCGCACTGCGCTGGTAGAGCTGGCAGGACAGCTTGCCATCGGCTACATAGAACTGG 1022 Query 30074 CACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30133 ||| ||||||||| || || |||||||| |||||| || ||||||||| | Sbjct 1023 AACAGGGCGTGGCAAGGGGGCAGAGCCATCTGGCCCACATCCGCCACGTTCCAGGCCGAG 1082 Query 30134 ACGATGATGCG 30144 ||||| | ||| Sbjct 1083 ACGATCAGGCG 1093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406273211170920