Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq5063 141 8e-29
seq2066 132 4e-26
seq4834 125 6e-24
>seq5063
Length=4177
Score = 141 bits (156), Expect = 8e-29
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || ||||| ||||||||| | || || || ||||| ||| | |||
Sbjct 2437 ATGCAAATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTCC 2378
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| |||| ||||| || || || ||||||||||| || || || ||||||
Sbjct 2377 GACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAA 2318
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | |||||| || ||| | || || | || ||||||| ||||||
Sbjct 2317 CAGCGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCCGACTACAAC 2258
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203
|| || |||||||| ||| | || ||||| | |||
Sbjct 2257 ATCCAGAAGGAGTCTACCCTCCACCTGGTTCTTCGT 2222
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || || || |||||||||||| | || || || ||||| ||| | ||
Sbjct 2814 CATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 2755
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| | || |||| ||||| || || || ||||| ||||| || || || |||||
Sbjct 2754 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCA 2695
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||||||| || | |||||| || ||| | || || | ||| | || || |||||
Sbjct 2694 ACAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCGGACTACAA 2635
Query 27167 CATTCAAAAGGAGTCGAC 27184
||| || ||||| |||||
Sbjct 2634 CATCCAGAAGGAATCGAC 2617
Score = 100 bits (110), Expect = 2e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074
|| ||| | || ||||||||||| ||| | || ||| | ||||| | || || ||
Sbjct 1867 GGAAAGACCATCACTCTTGAAGTCGAAGCCTCGGACACCATTGAAAATGTGAAGGCCAAG 1808
Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134
||||| ||||| || || || ||||||||||| ||||| | || | || ||||| ||
Sbjct 1807 ATTCAGGACAAGGAGGGAATCCCACCCGATCAGCAGCGCCTGATCTTTGCTGGCAAGCAG 1748
Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194
| |||||| | || | ||||| |||||||| || |||||||| || | || ||
Sbjct 1747 CTCGAAGACGGGCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTTCACCTG 1688
Query 27195 GTTTTGCGTTTGCGGGGTGG 27214
||| | ||| | || |||||
Sbjct 1687 GTTCTCCGTCTCCGCGGTGG 1668
>seq2066
Length=2850
Score = 132 bits (146), Expect = 4e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || |||||||||||| | || ||||| ||||| ||| | ||
Sbjct 1071 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACGATCACTCTCGAAGTCGAAGCCTC 1012
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||| | ||||||| ||||| || || |||||||| || || || || || |||||
Sbjct 1011 CGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCA 952
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|| || | || | |||||| || || | |||||| | ||| | || || |||||
Sbjct 951 GCAACGCCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCCTCTCGGACTACAA 892
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| ||| | || ||||| | || | || ||||| ||
Sbjct 891 CATCCAGAAGGAGTCCACCCTTCACCTGGTTCTTCGACTTCGCGGTGGAAT 841
Score = 132 bits (146), Expect = 4e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || |||| |||||| | || || || ||||| ||| | ||
Sbjct 2155 CATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 2096
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || |||| ||||| || || || ||||| ||||| || || || |||||
Sbjct 2095 GGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCA 2036
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||||||| || | |||||| || ||| | || || | ||| | || || |||||
Sbjct 2035 ACAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCGGACTACAA 1976
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| || |||||||| ||| | || |||||| | ||| | || ||||| ||
Sbjct 1975 CATCCAGAAGGAGTCCACCCTCCACTTGGTTCTCCGTCTCCGTGGTGGAAT 1925
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || |||| |||||| | || ||||| ||||| ||| | ||
Sbjct 210 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACGATAACTCTCGAAGTCGAAGCTTCT 151
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| ||||| || ||||||||||| |||||||| || || ||||||
Sbjct 150 GACACCATTGAGAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAA 91
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | |||||| || ||| | || || | || |||| || ||||||
Sbjct 90 CAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCGGACTACAAC 31
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197
|| || |||||||| ||| | || ||||||
Sbjct 30 ATCCAGAAGGAGTCCACCCTCCACTTGGTT 1
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || |||| |||||| | || || || ||||| ||| | ||
Sbjct 1660 CATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 1601
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || |||| ||||| || || || ||||| |||||||| || || |||||
Sbjct 1600 GGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 1541
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | || | |||||| || || | || || | || | || || |||||
Sbjct 1540 ACAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACATTGTCGGACTACAA 1481
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| |||||||| ||||| | || ||||| | || | || ||||| ||
Sbjct 1480 CATCCAAAAGGAATCGACTCTTCACCTGGTTCTCCGACTTCGCGGTGGAAT 1430
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || |||||||||||| | || || || |||||||| | ||
Sbjct 1431 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACGATCACCCTCGAAGTGGAGGCTTCG 1372
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || |||| ||||| || || || ||||| || || || || || |||||
Sbjct 1371 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 1312
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || | || | |||||| || || | |||||| | ||| | || || ||||||
Sbjct 1311 CAACGCCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCCTCTCGGACTACAAC 1252
Query 27168 ATTCAAAAGGAGTCGAC 27184
|| || ||||| || ||
Sbjct 1251 ATCCAGAAGGAATCTAC 1235
>seq4834
Length=88581
Score = 125 bits (138), Expect = 6e-24
Identities = 168/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043
|| |||||| || ||||| || || || ||||| ||| | || || || ||||| ||| |
Sbjct 21343 CGGCATGCAAATCTTTGTCAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTCGAAGC 21284
Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103
|| ||| | || |||| || || || |||||||| || |||||||| || |||||
Sbjct 21283 TTCGGACACAATCGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCCGA 21224
Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163
|||||||| | || | ||||| ||||| | || ||| | || |||| || ||
Sbjct 21223 CCAACAGCGCCTCATCTTTGCCGGAAAACAGCTTGAGGACGGCCGTACTCTTTCAGACTA 21164
Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||||||| |||||||| || | || ||||| | ||| | || ||||| ||
Sbjct 21163 CAACATTCAGAAGGAGTCTACTCTCCACTTGGTCCTCCGTCTTCGTGGTGGAAT 21110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434877572035200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |