Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5063 141 8e-29 seq2066 132 4e-26 seq4834 125 6e-24 >seq5063 Length=4177 Score = 141 bits (156), Expect = 8e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| ||||||||| | || || || ||||| ||| | ||| Sbjct 2437 ATGCAAATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTCC 2378 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||| || || || ||||||||||| || || || |||||| Sbjct 2377 GACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAA 2318 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| || ||| | || || | || ||||||| |||||| Sbjct 2317 CAGCGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCCGACTACAAC 2258 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 || || |||||||| ||| | || ||||| | ||| Sbjct 2257 ATCCAGAAGGAGTCTACCCTCCACCTGGTTCTTCGT 2222 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || |||||||||||| | || || || ||||| ||| | || Sbjct 2814 CATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 2755 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| ||||| || || || ||||| ||||| || || || ||||| Sbjct 2754 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCA 2695 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | |||||| || ||| | || || | ||| | || || ||||| Sbjct 2694 ACAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCGGACTACAA 2635 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||| ||||| Sbjct 2634 CATCCAGAAGGAATCGAC 2617 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 || ||| | || ||||||||||| ||| | || ||| | ||||| | || || || Sbjct 1867 GGAAAGACCATCACTCTTGAAGTCGAAGCCTCGGACACCATTGAAAATGTGAAGGCCAAG 1808 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||| ||||| || || || ||||||||||| ||||| | || | || ||||| || Sbjct 1807 ATTCAGGACAAGGAGGGAATCCCACCCGATCAGCAGCGCCTGATCTTTGCTGGCAAGCAG 1748 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 | |||||| | || | ||||| |||||||| || |||||||| || | || || Sbjct 1747 CTCGAAGACGGGCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTTCACCTG 1688 Query 27195 GTTTTGCGTTTGCGGGGTGG 27214 ||| | ||| | || ||||| Sbjct 1687 GTTCTCCGTCTCCGCGGTGG 1668 >seq2066 Length=2850 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| | || ||||| ||||| ||| | || Sbjct 1071 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACGATCACTCTCGAAGTCGAAGCCTC 1012 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| ||||| || || |||||||| || || || || || ||||| Sbjct 1011 CGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCA 952 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || | || | |||||| || || | |||||| | ||| | || || ||||| Sbjct 951 GCAACGCCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCCTCTCGGACTACAA 892 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || ||||| | || | || ||||| || Sbjct 891 CATCCAGAAGGAGTCCACCCTTCACCTGGTTCTTCGACTTCGCGGTGGAAT 841 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| | || || || ||||| ||| | || Sbjct 2155 CATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 2096 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || ||||| ||||| || || || ||||| Sbjct 2095 GGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCA 2036 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||||| || | |||||| || ||| | || || | ||| | || || ||||| Sbjct 2035 ACAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCGGACTACAA 1976 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | || |||||| | ||| | || ||||| || Sbjct 1975 CATCCAGAAGGAGTCCACCCTCCACTTGGTTCTCCGTCTCCGTGGTGGAAT 1925 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| | || ||||| ||||| ||| | || Sbjct 210 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACGATAACTCTCGAAGTCGAAGCTTCT 151 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || ||||||||||| |||||||| || || |||||| Sbjct 150 GACACCATTGAGAATGTCAAGGCGAAGATTCAAGACAAGGAAGGCATTCCCCCAGATCAA 91 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| || ||| | || || | || |||| || |||||| Sbjct 90 CAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCGGACTACAAC 31 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || |||||||| ||| | || |||||| Sbjct 30 ATCCAGAAGGAGTCCACCCTCCACTTGGTT 1 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| | || || || ||||| ||| | || Sbjct 1660 CATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 1601 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || || ||||| |||||||| || || ||||| Sbjct 1600 GGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 1541 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||| || || | || || | || | || || ||||| Sbjct 1540 ACAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACATTGTCGGACTACAA 1481 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||| ||||| | || ||||| | || | || ||||| || Sbjct 1480 CATCCAAAAGGAATCGACTCTTCACCTGGTTCTCCGACTTCGCGGTGGAAT 1430 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||||||| | || || || |||||||| | || Sbjct 1431 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACGATCACCCTCGAAGTGGAGGCTTCG 1372 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || || || ||||| || || || || || ||||| Sbjct 1371 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 1312 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | |||||| || || | |||||| | ||| | || || |||||| Sbjct 1311 CAACGCCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCCTCTCGGACTACAAC 1252 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||| || || Sbjct 1251 ATCCAGAAGGAATCTAC 1235 >seq4834 Length=88581 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| || ||||| || || || ||||| ||| | || || || ||||| ||| | Sbjct 21343 CGGCATGCAAATCTTTGTCAAGACGCTCACCGGAAAGACCATCACCCTCGAAGTCGAAGC 21284 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| | || |||| || || || |||||||| || |||||||| || ||||| Sbjct 21283 TTCGGACACAATCGAGAACGTGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCCGA 21224 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 |||||||| | || | ||||| ||||| | || ||| | || |||| || || Sbjct 21223 CCAACAGCGCCTCATCTTTGCCGGAAAACAGCTTGAGGACGGCCGTACTCTTTCAGACTA 21164 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| |||||||| || | || ||||| | ||| | || ||||| || Sbjct 21163 CAACATTCAGAAGGAGTCTACTCTCCACTTGGTCCTCCGTCTTCGTGGTGGAAT 21110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434877572035200