Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_028672.1
Length=149732
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 205 9e-48
>seq2257
Length=8409
Score = 205 bits (226), Expect = 9e-48
Identities = 260/356 (73%), Gaps = 4/356 (1%)
Strand=Plus/Minus
Query 24282 CATGATGTCGTCAAAGACGATCGACGGATC--TGCCAGGATGTTACGGATGATATGGGTG 24339
|| |||||||||||| | | ||||| || || || || || || ||||| || |||
Sbjct 7584 CACGATGTCGTCAAAAATAACGGACGGGTCATTGGCA--ATATTGCGAATGATGTGCGTG 7527
Query 24340 TATGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTT 24399
|| ||||| ||||| || ||||| ||| ||||| || || | ||| ||||||||
Sbjct 7526 TACGAGCGCGAGTGAATCGTCTCGGAGAAAGCCCAGGTTTCAATCCAGGTTTCCAGCTCC 7467
Query 24400 GTGTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGA 24459
| || || | || || | | |||| || | |||||||| | ||||||||
Sbjct 7466 GGAATCGATACCAAAGGCAGGAAGGCCACGTTGGGGCTGCGGCCCTGGATGGAATCCAGC 7407
Query 24460 AGGATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG 24519
| | |||| |||||||| ||||||||||| |||||||| ||||| || ||||| |||
Sbjct 7406 AAGGTCTGATACTTCAGATTGCTGATGAAAATGTGCTTTTCGTGGTCAGGCAGGTTCTGA 7347
Query 24520 TAGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGC 24579
|||||||| ||||| |||| | || ||||| ||||||||||||||||| | || |||
Sbjct 7346 TAGTCGATCCGGTCCTGGGTAATGTCCACTTCCTCCGGACGCCAGAAGAAGGACAACTGC 7287
Query 24580 TTCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTT 24635
|| || |||||||| || || | | | ||| |||||||| ||||||| |||||
Sbjct 7286 TTTTCAATCAGCTTTTCAAAAATCGGATATTTTTGCTGGTCGTAGCGAGCCACGTT 7231
Score = 176 bits (194), Expect = 4e-39
Identities = 699/1084 (64%), Gaps = 32/1084 (3%)
Strand=Plus/Minus
Query 25299 GGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAAT 25358
||| | ||||| ||| | | | |||| || ||||||| ||| || |||| |||| |||
Sbjct 6804 GGACTGCTTGACGGATACCAGACCACGCGGAGGCTCAATACCATTGGTGGCATTGGCAAT 6745
Query 25359 CTGACTGGACGTCTCGCAAGGCATCATCGTGGACAGCGTAGAGTTACGCAGTCCATGAAT 25418
||| ||||| || || ||||||||| | || ||| || ||||| ||||| || || |
Sbjct 6744 CTGGCTGGAGGTTTCCGAAGGCATCAAGGCGGTCAGGGTCGAGTTGCGCAGACCGTGCTT 6685
Query 25419 AGCGATGTCGATACGCAGCTTTTCCCAATCCATCTTCAGTTTCGCAGTGTGGAGGCCATC 25478
|||| || |||||| ||||||||||| | ||| | | || || || ||
Sbjct 6684 GACGATATCAGCACGCAGGGCTTCCCAATCCAGGTGCAGCGGCTCGTTGCAGATACCGTC 6625
Query 25479 TACCTCTTTCTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGTATGTGGTCTCGTGGAA 25538
|| ||||||||||| |||| | ||||| | || | ||| || || || | |||
Sbjct 6624 CACATCTTTCTTGTAGGTGTCGGTAGGCAGCAAACCAGCGGCGTACGTCGTTTCATCGAA 6565
Query 25539 GAGATCACATTTGCCCAGTTCTTTTGCCAGGTCAACCGACGCTTCCAGCAGGTAATACTG 25598
| ||| || || ||| | || | ||||| || | || |||||| |||||
Sbjct 6564 GGCATCGCAAGGACCGTATTCGCGCGACAACTGCACCGAAGCCTTCAACAGGTAGTACTG 6505
Query 25599 GAATGCTTCAGCCAGTTCGT--GAACAGCATTTGCTGCACGAGGATCGCTGTACTTCAGG 25656
|| |||||| | || || | ||| | ||| |||||| ||| |
Sbjct 6504 GATGGCTTCAAAC-GTGCGGTGGGTCAG-ACCCAAGGCAGCGGGATCGGAGTAACGGGTG 6447
Query 25657 CCACGCTTCGCCAGGTAATATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCGCAGT 25716
|| ||| |||| ||| || || ||||| | ||||| ||||| | || |||
Sbjct 6446 CCGTTCTTGGCCAAGTAGTAAGCGTAGTTGATGACGCCAACGCCCAGGGAGCGACGCTTG 6387
Query 25717 TTAGTC---TTCTCTGCCGCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAAT 25773
|| || ||| ||| ||| ||||| |||| ||| || || | |||| |||||
Sbjct 6386 TTGGTTGCGTTCAGTGCAGCCTTGACCGGGTAGTCCTGGTAGTCCAGCAGAGCATCCAGA 6327
Query 25774 GCACGAACCAGT-GTACGGACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAG 25832
|||||||| | || | | ||| | | || || ||||| ||||| || ||
Sbjct 6326 GCACGAACAATCAGTTCAGCCAGACCGTC-CAGCTCGTCCAGGGACTCCAGAGCACCCAG 6268
Query 25833 GTTGATGGCAGACAGAGTACACAGGGCCACTTCCCCC---GGGTCGTTCGGATCATTAAT 25889
||||| || ||||| || ||||| || | ||| || || |||||| |||| || |
Sbjct 6267 GTTGAAAGCCGACAGCGTGCACAGCGCGATTTCACCTTCAGGATCGTTCAGATCGTTCA- 6209
Query 25890 GTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGG 25949
|| || | || ||||| |||||||||||||||||||||||||| ||| ||
Sbjct 6208 ------AA--GGCTTGGTAGGCAGAGCGATTTCCATGCACAGGTTGGACTGGCGCACAGG 6157
Query 25950 GGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAAT 26009
|| | || | | ||| ||||| | |||||||| ||||| |||| ||| | ||| ||
Sbjct 6156 AGCGCGGTCAGCCTGGAATGGGCTGTGCGTGTTGCAATGGTCCACGTTCTGAATGTAGAT 6097
Query 26010 ACGGCCTGT-CTGAGAACGCTCCTGACCAAACACGGAGAAGGCATCTGCCGCCGAGATGG 26068
|||||| || ||| | |||||| || | || |||||| || | || | | |
Sbjct 6096 ACGGCCGGTGCTG-GCACGCTCTTGCATCAGCAAGGAGAACAGCTCCACGGCTGGCAGGC 6038
Query 26069 TTTTCTTCGCCACAGAAGGATCTGCCTCCAGTTC--CTCATAAAGCTGTTGGAATTTCTC 26126
| ||| | | |||||| ||| || | || || || | | ||| | ||
Sbjct 6037 TGCGCTTGCGGATGGCAGGATCCTGCTC--GTACATTTCGTACAGACGCTCGAACTCGTC 5980
Query 26127 TTGGTTAGAGAAGAAATACTCATACAGCTTACCTTTTGCCACGTTAGGATGGAACAATGT 26186
|||| | ||||| || ||||| || | ||| || ||||| ||
Sbjct 5979 CTGGTCGGCAAAGAAGGCTTCGTACAG---GCCGGGCACGTCGTGCGGCGAGAACAGCGT 5923
Query 26187 GATGTTCTTACCCTGCTGGAGGCGAGAGTACAGCATTTTGTTCAACTGAAGCCCGTAGTC 26246
||| | | |||| ||||| |||||||| ||| | ||||| ||||||||
Sbjct 5922 GATATGGCTGCCCTTGATCAGGCGCTGGTACAGCAAGCGGTTGATCTGAACACCGTAGTC 5863
Query 26247 CACATGGCGAGCACGAGTGCTC-TCAGTACCACGGTTGTTCTTCAGCACAATCAGGCTTT 26305
|| || ||| ||| || || || |||||||||||||||||| || | ||| |||
Sbjct 5862 CAAGTGACGAATACG-GTTTTCTTCCACACCACGGTTGTTCTTCAGAACCAGCAGTGTTT 5804
Query 26306 CAAAATCCCAGTGCCACATCGGATAAAAATAGTTAGCCGATGCCTTACGGACGCCCCCTT 26365
| | ||| ||||||||| || || || || | |||| | ||| ||||| ||||
Sbjct 5803 CCACTTCCAGGTGCCACATGGGGTAGAACAAGGTTGCCGCACCACCACGCACGCCGCCTT 5744
Query 26366 GCGA 26369
||||
Sbjct 5743 GCGA 5740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478969432523200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |