Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq2257 205 9e-48 >seq2257 Length=8409 Score = 205 bits (226), Expect = 9e-48 Identities = 260/356 (73%), Gaps = 4/356 (1%) Strand=Plus/Minus Query 24282 CATGATGTCGTCAAAGACGATCGACGGATC--TGCCAGGATGTTACGGATGATATGGGTG 24339 || |||||||||||| | | ||||| || || || || || || ||||| || ||| Sbjct 7584 CACGATGTCGTCAAAAATAACGGACGGGTCATTGGCA--ATATTGCGAATGATGTGCGTG 7527 Query 24340 TATGAGCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTT 24399 || ||||| ||||| || ||||| ||| ||||| || || | ||| |||||||| Sbjct 7526 TACGAGCGCGAGTGAATCGTCTCGGAGAAAGCCCAGGTTTCAATCCAGGTTTCCAGCTCC 7467 Query 24400 GTGTCGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGA 24459 | || || | || || | | |||| || | |||||||| | |||||||| Sbjct 7466 GGAATCGATACCAAAGGCAGGAAGGCCACGTTGGGGCTGCGGCCCTGGATGGAATCCAGC 7407 Query 24460 AGGATCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATG 24519 | | |||| |||||||| ||||||||||| |||||||| ||||| || ||||| ||| Sbjct 7406 AAGGTCTGATACTTCAGATTGCTGATGAAAATGTGCTTTTCGTGGTCAGGCAGGTTCTGA 7347 Query 24520 TAGTCGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGC 24579 |||||||| ||||| |||| | || ||||| ||||||||||||||||| | || ||| Sbjct 7346 TAGTCGATCCGGTCCTGGGTAATGTCCACTTCCTCCGGACGCCAGAAGAAGGACAACTGC 7287 Query 24580 TTCTCGATCAGCTTCTCGAACTTGGCGTGTTTCTGCTGGTCATAGCGAGAAACGTT 24635 || || |||||||| || || | | | ||| |||||||| ||||||| ||||| Sbjct 7286 TTTTCAATCAGCTTTTCAAAAATCGGATATTTTTGCTGGTCGTAGCGAGCCACGTT 7231 Score = 176 bits (194), Expect = 4e-39 Identities = 699/1084 (64%), Gaps = 32/1084 (3%) Strand=Plus/Minus Query 25299 GGATTTCTTGAAGGAAATCGCATCACGAGGTGGCTCAAAACCGTTCGTGGAGTTGGTAAT 25358 ||| | ||||| ||| | | | |||| || ||||||| ||| || |||| |||| ||| Sbjct 6804 GGACTGCTTGACGGATACCAGACCACGCGGAGGCTCAATACCATTGGTGGCATTGGCAAT 6745 Query 25359 CTGACTGGACGTCTCGCAAGGCATCATCGTGGACAGCGTAGAGTTACGCAGTCCATGAAT 25418 ||| ||||| || || ||||||||| | || ||| || ||||| ||||| || || | Sbjct 6744 CTGGCTGGAGGTTTCCGAAGGCATCAAGGCGGTCAGGGTCGAGTTGCGCAGACCGTGCTT 6685 Query 25419 AGCGATGTCGATACGCAGCTTTTCCCAATCCATCTTCAGTTTCGCAGTGTGGAGGCCATC 25478 |||| || |||||| ||||||||||| | ||| | | || || || || Sbjct 6684 GACGATATCAGCACGCAGGGCTTCCCAATCCAGGTGCAGCGGCTCGTTGCAGATACCGTC 6625 Query 25479 TACCTCTTTCTTGTAACGGTCGATCGGCAGAATGCCCTGAGAGTATGTGGTCTCGTGGAA 25538 || ||||||||||| |||| | ||||| | || | ||| || || || | ||| Sbjct 6624 CACATCTTTCTTGTAGGTGTCGGTAGGCAGCAAACCAGCGGCGTACGTCGTTTCATCGAA 6565 Query 25539 GAGATCACATTTGCCCAGTTCTTTTGCCAGGTCAACCGACGCTTCCAGCAGGTAATACTG 25598 | ||| || || ||| | || | ||||| || | || |||||| ||||| Sbjct 6564 GGCATCGCAAGGACCGTATTCGCGCGACAACTGCACCGAAGCCTTCAACAGGTAGTACTG 6505 Query 25599 GAATGCTTCAGCCAGTTCGT--GAACAGCATTTGCTGCACGAGGATCGCTGTACTTCAGG 25656 || |||||| | || || | ||| | ||| |||||| ||| | Sbjct 6504 GATGGCTTCAAAC-GTGCGGTGGGTCAG-ACCCAAGGCAGCGGGATCGGAGTAACGGGTG 6447 Query 25657 CCACGCTTCGCCAGGTAATATGCTAAGTTGGTCCAGCCAATACCCAGAGTACGTCGCAGT 25716 || ||| |||| ||| || || ||||| | ||||| ||||| | || ||| Sbjct 6446 CCGTTCTTGGCCAAGTAGTAAGCGTAGTTGATGACGCCAACGCCCAGGGAGCGACGCTTG 6387 Query 25717 TTAGTC---TTCTCTGCCGCCAGAACCGGATAGTTCTGATAATCTAACAGACGATCCAAT 25773 || || ||| ||| ||| ||||| |||| ||| || || | |||| ||||| Sbjct 6386 TTGGTTGCGTTCAGTGCAGCCTTGACCGGGTAGTCCTGGTAGTCCAGCAGAGCATCCAGA 6327 Query 25774 GCACGAACCAGT-GTACGGACAGGCTCACGCATGTCTTCCAGCTTCTCCACCTTGCCGAG 25832 |||||||| | || | | ||| | | || || ||||| ||||| || || Sbjct 6326 GCACGAACAATCAGTTCAGCCAGACCGTC-CAGCTCGTCCAGGGACTCCAGAGCACCCAG 6268 Query 25833 GTTGATGGCAGACAGAGTACACAGGGCCACTTCCCCC---GGGTCGTTCGGATCATTAAT 25889 ||||| || ||||| || ||||| || | ||| || || |||||| |||| || | Sbjct 6267 GTTGAAAGCCGACAGCGTGCACAGCGCGATTTCACCTTCAGGATCGTTCAGATCGTTCA- 6209 Query 25890 GTCCGTAATCGGATGTGTCGGCAGGGCGATTTCCATGCACAGGTTGGACTGTTTCACCGG 25949 || || | || ||||| |||||||||||||||||||||||||| ||| || Sbjct 6208 ------AA--GGCTTGGTAGGCAGAGCGATTTCCATGCACAGGTTGGACTGGCGCACAGG 6157 Query 25950 GGCCTGTTCGGGGTCGAACGGGCTATTAGTGTTGCAGTGGTCAACGTGCTGCACGTAAAT 26009 || | || | | ||| ||||| | |||||||| ||||| |||| ||| | ||| || Sbjct 6156 AGCGCGGTCAGCCTGGAATGGGCTGTGCGTGTTGCAATGGTCCACGTTCTGAATGTAGAT 6097 Query 26010 ACGGCCTGT-CTGAGAACGCTCCTGACCAAACACGGAGAAGGCATCTGCCGCCGAGATGG 26068 |||||| || ||| | |||||| || | || |||||| || | || | | | Sbjct 6096 ACGGCCGGTGCTG-GCACGCTCTTGCATCAGCAAGGAGAACAGCTCCACGGCTGGCAGGC 6038 Query 26069 TTTTCTTCGCCACAGAAGGATCTGCCTCCAGTTC--CTCATAAAGCTGTTGGAATTTCTC 26126 | ||| | | |||||| ||| || | || || || | | ||| | || Sbjct 6037 TGCGCTTGCGGATGGCAGGATCCTGCTC--GTACATTTCGTACAGACGCTCGAACTCGTC 5980 Query 26127 TTGGTTAGAGAAGAAATACTCATACAGCTTACCTTTTGCCACGTTAGGATGGAACAATGT 26186 |||| | ||||| || ||||| || | ||| || ||||| || Sbjct 5979 CTGGTCGGCAAAGAAGGCTTCGTACAG---GCCGGGCACGTCGTGCGGCGAGAACAGCGT 5923 Query 26187 GATGTTCTTACCCTGCTGGAGGCGAGAGTACAGCATTTTGTTCAACTGAAGCCCGTAGTC 26246 ||| | | |||| ||||| |||||||| ||| | ||||| |||||||| Sbjct 5922 GATATGGCTGCCCTTGATCAGGCGCTGGTACAGCAAGCGGTTGATCTGAACACCGTAGTC 5863 Query 26247 CACATGGCGAGCACGAGTGCTC-TCAGTACCACGGTTGTTCTTCAGCACAATCAGGCTTT 26305 || || ||| ||| || || || |||||||||||||||||| || | ||| ||| Sbjct 5862 CAAGTGACGAATACG-GTTTTCTTCCACACCACGGTTGTTCTTCAGAACCAGCAGTGTTT 5804 Query 26306 CAAAATCCCAGTGCCACATCGGATAAAAATAGTTAGCCGATGCCTTACGGACGCCCCCTT 26365 | | ||| ||||||||| || || || || | |||| | ||| ||||| |||| Sbjct 5803 CCACTTCCAGGTGCCACATGGGGTAGAACAAGGTTGCCGCACCACCACGCACGCCGCCTT 5744 Query 26366 GCGA 26369 |||| Sbjct 5743 GCGA 5740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478969432523200