Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq486 129 2e-25 >seq486 Length=1082 Score = 129 bits (142), Expect = 2e-25 Identities = 289/425 (68%), Gaps = 18/425 (4%) Strand=Plus/Minus Query 5841 CGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT--CCACCACGGCCTGCGCCTGCTG 5898 |||||| || || || || ||||||| ||||||| | || | ||| | ||| |||| Sbjct 535 CGGCCCTGCCGGTACCGGCAAGACCTACCTGGCCGTGGCCTGCGCGGTCGACGC--GCTG 478 Query 5899 GAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAG 5958 ||| | || | | ||| || | | || || || || ||||| | |||||| Sbjct 477 GAGCGTGAACAGGTGCGTCGCATCCTGCTGGTACGCCCGGCAGTCGAGGCCGGCGAGAAG 418 Query 5959 CTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTG 6018 |||||||||||||||||| ||| | ||||||| | || ||||| |||| || Sbjct 417 CTCGGCTTCCTGCCCGGCGACCTGGCCCAGAAGATCGACCCGTACCTGCGCCCGCTGTAC 358 Query 6019 GACGCGGTGATCGACCTGGTCGGCC-CGACGA--TGACGAAGCGCCTCCTCGAGTCGCGC 6075 ||||| || ||| || ||||| ||| | || | |||| | |||| ||| Sbjct 357 GACGCCCTGTACGAGATGCTCGGCTTCGAACACGTGGCCAAGC---TGATCGAA---CGC 304 Query 6076 CAGCTG---GAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTAC 6132 ||| || ||| |||||||||||||||||||||| ||||| || | ||| ||| | | Sbjct 303 CAGGTGATCGAGATCGCCCCGCTGGCCTACATGCGCGGCCGCACCCTGAACAACAGCTTC 244 Query 6133 ATCGTCGCTGACGAGATGCAGAACGCCACC-CCGCGCCAGACCGCGCTGCTGGTGACCCG 6191 ||| || ||||||| |||||| ||||| || | |||| | || | | ||||| Sbjct 243 ATCATCCTCGACGAGAGCCAGAACACCACCGTCGAG-CAGATGAAGATGTTCCTCACCCG 185 Query 6192 CCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGCCGCC 6251 | |||||||| | | ||||| | | ||||||| ||||| ||||||||||| Sbjct 184 TATCGGCTTCGGTTCCACTGCCGTGATCACCGGTGACATCACCCAGGTCGACCTGCCGCG 125 Query 6252 CGGCA 6256 ||||| Sbjct 124 CGGCA 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191470922860800