Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_028773.1
Length=182145
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 165 9e-36
>seq2257
Length=8409
Score = 165 bits (182), Expect = 9e-36
Identities = 287/410 (70%), Gaps = 18/410 (4%)
Strand=Plus/Plus
Query 18307 TTGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCTGT--- 18363
||||| || || || ||||| ||||| ||||| || || ||||||||| |||| |
Sbjct 5482 TTGCCCACGCCCATCATGGCTGGCGTGCGCACACCCACTCGCCAGTTC---AGCTCTTGC 5538
Query 18364 GTTAAGATTGAAGTCGGTGACAGCCTCGA----ATCAATTA-ACGAATCAGCCGCCGCAG 18418
|| ||| ||| | |||||||| || |||||| |||| |||| ||| |
Sbjct 5539 GTGCTGATCGAATGTGACGACAGCCTGGACAGCATCAATGCCACGAC-CAGC-GCCATTG 5596
Query 18419 T-CGTAAATTATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCG 18477
| ||| | | | || || || ||||||||||| || | ||| || ||||| ||
Sbjct 5597 TTCGTTACGTGTCACAG----CGTGCCGGTATCGGTATCAATGGTGGCCGCATTCGCGCC 5652
Query 18478 GAAGGAAGTCAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAA 18537
| ||| || || |||| |||||||| ||||||| ||| | || |||| ||
Sbjct 5653 GTAGGCAGCGAAATTCGTGGTGGTGAAGCACAACACACGGGTTGCCTGCCGTTCTTCAAG 5712
Query 18538 CATTTCCAGACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACT 18597
|||||| |||| || || || || || |||||||| || |||||||||||||||||
Sbjct 5713 ATGTTCCAGGCTGCGGTGAAGTCCTGCTCGCAAGGCGGCGTGCGTGGTGGTGCGGCAACC 5772
Query 18598 CTGTATTATCCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAA 18657
||| || || |||||||| || ||| | |||| ||| | |||||||| || |||
Sbjct 5773 TTGTTCTACCCCATGTGGCACCTGGAAGTGGAAACACTGCTGGTTCTGAAGAACAACCGT 5832
Query 18658 GGTGTTGATGAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAA 18707
||||| || |||||||| |||||||| | || || ||| | || |||||
Sbjct 5833 GGTGTGGAAGAAAACCGTATTCGTCACTTGGACTACGGTGTTCAGATCAA 5882
Score = 125 bits (138), Expect = 8e-24
Identities = 222/321 (69%), Gaps = 2/321 (1%)
Strand=Plus/Plus
Query 20094 ATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGTCCTGAAGAGGTTGAC 20153
|| || ||||| | ||||||||||||||| |||||||||||||| || || || |||
Sbjct 7264 ATTTTTGAAAAGCTGATTGAAAAGCAGTTGTCCTTCTTCTGGCGTCCGGAGGAAGTGGAC 7323
Query 20154 GTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAAAAACATATCTTTACT 20213
| || | || |||||| ||| | || | || || || ||||| || || || |
Sbjct 7324 ATTACCCAGGACCGGATCGACTATCAGAACCTGCCTGACCACGAAAAGCACATTTTCATC 7383
Query 20214 TCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGTGCTCCTAACACTGCT 20273
|||| |||||||||||| ||| || ||| || | ||||| || || ||| ||
Sbjct 7384 AGCAATCTGAAGTATCAGACCTTGCTGGATTCCATCCAGGGCCGCAGCCCCAACGTGGCC 7443
Query 20274 TTTATGTCCATCGTATCTGATGTAACA-CTTGACACATGGATTCCTACCTGGGCGTTCTC 20332
|| || | | ||||| ||| | || || || |||||| |||||||| |||||
Sbjct 7444 TTCCTGCCTTTGGTATC-GATTCCGGAGCTGGAAACCTGGATTGAAACCTGGGCTTTCTC 7502
Query 20333 GGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAACGTGTACGAAGATCCGTC 20392
||||| || ||| || || || || ||||| || ||||| | | | || |||||
Sbjct 7503 CGAGACGATTCACTCGCGCTCGTACACGCACATCATTCGCAATATTGCCAATGACCCGTC 7562
Query 20393 CAAGATCTTTGACGAAATCGT 20413
| || |||||||| |||||
Sbjct 7563 CGTTATTTTTGACGACATCGT 7583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582681295658000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |