Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq2257 165 9e-36 >seq2257 Length=8409 Score = 165 bits (182), Expect = 9e-36 Identities = 287/410 (70%), Gaps = 18/410 (4%) Strand=Plus/Plus Query 18307 TTGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCTGT--- 18363 ||||| || || || ||||| ||||| ||||| || || ||||||||| |||| | Sbjct 5482 TTGCCCACGCCCATCATGGCTGGCGTGCGCACACCCACTCGCCAGTTC---AGCTCTTGC 5538 Query 18364 GTTAAGATTGAAGTCGGTGACAGCCTCGA----ATCAATTA-ACGAATCAGCCGCCGCAG 18418 || ||| ||| | |||||||| || |||||| |||| |||| ||| | Sbjct 5539 GTGCTGATCGAATGTGACGACAGCCTGGACAGCATCAATGCCACGAC-CAGC-GCCATTG 5596 Query 18419 T-CGTAAATTATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCG 18477 | ||| | | | || || || ||||||||||| || | ||| || ||||| || Sbjct 5597 TTCGTTACGTGTCACAG----CGTGCCGGTATCGGTATCAATGGTGGCCGCATTCGCGCC 5652 Query 18478 GAAGGAAGTCAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAA 18537 | ||| || || |||| |||||||| ||||||| ||| | || |||| || Sbjct 5653 GTAGGCAGCGAAATTCGTGGTGGTGAAGCACAACACACGGGTTGCCTGCCGTTCTTCAAG 5712 Query 18538 CATTTCCAGACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACT 18597 |||||| |||| || || || || || |||||||| || ||||||||||||||||| Sbjct 5713 ATGTTCCAGGCTGCGGTGAAGTCCTGCTCGCAAGGCGGCGTGCGTGGTGGTGCGGCAACC 5772 Query 18598 CTGTATTATCCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAA 18657 ||| || || |||||||| || ||| | |||| ||| | |||||||| || ||| Sbjct 5773 TTGTTCTACCCCATGTGGCACCTGGAAGTGGAAACACTGCTGGTTCTGAAGAACAACCGT 5832 Query 18658 GGTGTTGATGAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAA 18707 ||||| || |||||||| |||||||| | || || ||| | || ||||| Sbjct 5833 GGTGTGGAAGAAAACCGTATTCGTCACTTGGACTACGGTGTTCAGATCAA 5882 Score = 125 bits (138), Expect = 8e-24 Identities = 222/321 (69%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 20094 ATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGTCCTGAAGAGGTTGAC 20153 || || ||||| | ||||||||||||||| |||||||||||||| || || || ||| Sbjct 7264 ATTTTTGAAAAGCTGATTGAAAAGCAGTTGTCCTTCTTCTGGCGTCCGGAGGAAGTGGAC 7323 Query 20154 GTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAAAAACATATCTTTACT 20213 | || | || |||||| ||| | || | || || || ||||| || || || | Sbjct 7324 ATTACCCAGGACCGGATCGACTATCAGAACCTGCCTGACCACGAAAAGCACATTTTCATC 7383 Query 20214 TCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGTGCTCCTAACACTGCT 20273 |||| |||||||||||| ||| || ||| || | ||||| || || ||| || Sbjct 7384 AGCAATCTGAAGTATCAGACCTTGCTGGATTCCATCCAGGGCCGCAGCCCCAACGTGGCC 7443 Query 20274 TTTATGTCCATCGTATCTGATGTAACA-CTTGACACATGGATTCCTACCTGGGCGTTCTC 20332 || || | | ||||| ||| | || || || |||||| |||||||| ||||| Sbjct 7444 TTCCTGCCTTTGGTATC-GATTCCGGAGCTGGAAACCTGGATTGAAACCTGGGCTTTCTC 7502 Query 20333 GGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAACGTGTACGAAGATCCGTC 20392 ||||| || ||| || || || || ||||| || ||||| | | | || ||||| Sbjct 7503 CGAGACGATTCACTCGCGCTCGTACACGCACATCATTCGCAATATTGCCAATGACCCGTC 7562 Query 20393 CAAGATCTTTGACGAAATCGT 20413 | || |||||||| ||||| Sbjct 7563 CGTTATTTTTGACGACATCGT 7583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582681295658000