Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq2872 185 3e-42 seq5543 168 2e-37 >seq2872 Length=1900 Score = 185 bits (204), Expect = 3e-42 Identities = 186/242 (77%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||| ||| | ||||||||| || || || || ||||| ||||| || ||||| | Sbjct 447 GAAGTCGACGTCGAAGTCGGGCATCGAGACCCGTTCAGGGTTGAGGAAACGTTCGAACAG 506 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 || ||| |||| || ||||||||||||||| || |||||| |||||||| || Sbjct 507 CAGGTCGTAGGCCAGCGGGTCGAGGTCGGTGATCTTCAGCACGTAGGCCACCAGCGAGCC 566 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 ||| |||| || || || ||||| ||| ||||||||| | ||||||||| |||||| Sbjct 567 GGCACCCGACCCCCGGCCCGGACCTACCGGCACGCCGTTGTTCTTGGCCCACTTGATGAA 626 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 40413 ||| |||| ||||||||| |||||||||||||||||||| ||||| | |||| | Sbjct 627 GTCCATAACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATGTCCAGCTCGAA 686 Query 40414 CT 40415 || Sbjct 687 CT 688 >seq5543 Length=16390 Score = 168 bits (186), Expect = 2e-37 Identities = 174/225 (77%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 40175 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGA-T 40233 ||||| | ||||| ||| ||||||||||||||||||||||||||||| || ||||| | Sbjct 8850 AAGTCCACGTCAAAGTCAGGCATGGACACGCGCTCGGGGTTCAGGAAACGTTCGAACAGC 8909 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 || | || | || || || |||||||| ||||| | || |||||| ||||| ||||| Sbjct 8910 AAGTCATAGCGCAAG-GGGTCCAGGTCGGTAATCCCCATGCTGTAGGCCACCAGGGAACC 8968 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 || |||||||||| || || || || |||||| || | |||| ||||| ||||| Sbjct 8969 CGCACCCGAGCCTCGGCCTGGTCCTACGGGCACGCCATTGTGCTTGCCCCAGTTAATGAA 9028 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGAT 40398 ||| || |||| |||||||||| |||||| ||||| |||||| Sbjct 9029 GTCCGCCACGATCAGGAAGTAGCCCGGGAACCCCATGGAGATGAT 9073 Score = 98.7 bits (108), Expect = 3e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 39211 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCC 39270 |||||||| |||||||||| |||||||||||||| |||||||||| |||||| || Sbjct 7808 CTTGGCCATTTCCTCGGGCTTTTTCTTGCCCATGGCACGACGCAGCAAGTCGGCACCACC 7867 Query 39271 CAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 39330 ||| ||||||| ||| ||||||| | | |||||| |||||||||| || | Sbjct 7868 CAGCGAGTAGCCACCGATAATCTGCGAGATCAGCATCACCTGTTCCTGGTAGACAATCAC 7927 Query 39331 CCCGTACGT 39339 |||||| || Sbjct 7928 CCCGTAGGT 7936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160392094756740