Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq2872 156 1e-33 seq5543 122 3e-23 >seq2872 Length=1900 Score = 156 bits (172), Expect = 1e-33 Identities = 208/286 (73%), Gaps = 6/286 (2%) Strand=Plus/Plus Query 39040 TCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTC-ATC--GAAGTCGATGTCCACG 39096 |||| |||||| ||||||| | | ||||| ||| || |||||||| ||| | | Sbjct 406 TCGGCCACGTACTCGATCACGCGGTC---GCGACCGTCCATGCAGAAGTCGACGTCGAAG 462 Query 39097 TCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATG 39156 |||||||| ||||| || |||||||| ||||| || ||||| | || ||| | | Sbjct 463 TCGGGCATCGAGACCCGTTCAGGGTTGAGGAAACGTTCGAACAGCAGGTCGTAGGCCAGC 522 Query 39157 GGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGC 39216 ||||| |||||||||||| || |||| || |||||||||| || | || || || Sbjct 523 GGGTCGAGGTCGGTGATCTTCAGCACGTAGGCCACCAGCGAGCCGGCACCCGACCCCCGG 582 Query 39217 CCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGG 39276 || || || ||| ||||||||| | ||| ||||| ||||||||| |||| ||| Sbjct 583 CCCGGACCTACCGGCACGCCGTTGTTCTTGGCCCACTTGATGAAGTCCATAACGATCAGG 642 Query 39277 AAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACT 39322 ||||| ||||| ||||||||| |||| ||||| | |||| ||| Sbjct 643 AAGTAACCGGGGAAGCCCATCTGGATGATGATGTCCAGCTCGAACT 688 >seq5543 Length=16390 Score = 122 bits (134), Expect = 3e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39082 AAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATG 39141 ||||| | ||| | ||| |||||||| || ||||| ||||||||||| || ||||| | Sbjct 8850 AAGTCCACGTCAAAGTCAGGCATGGACACGCGCTCGGGGTTCAGGAAACGTTCGAACAGC 8909 Query 39142 AGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCA 39201 | | | | | ||||||||||||||| ||||| | | ||| || |||| || || Sbjct 8910 AAGTCATAGCGCAAGGGGTCCAGGTCGGTAATCCCCATGCTGTAGGCCACCAGGGAACCC 8969 Query 39202 GCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAG 39261 || | ||||| || || || || || |||||| || | ||| ||||| |||||| Sbjct 8970 GCACCCGAGCCTCGGCCTGGTCCTACGGGCACGCCATTGTGCTTGCCCCAGTTAATGAAG 9029 Query 39262 TCGGCGACGACGAGGAAGTACGACGGGAACCCCAT 39296 || || |||| |||||||| |||||||||||| Sbjct 9030 TCCGCCACGATCAGGAAGTAGCCCGGGAACCCCAT 9064 Score = 80.6 bits (88), Expect = 9e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 38118 CTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACC 38177 |||||||| |||||||||| |||||||||||||| ||||| || | |||||| ||| Sbjct 7808 CTTGGCCATTTCCTCGGGCTTTTTCTTGCCCATGGCACGACGCAGCAAGTCGGCACCACC 7867 Query 38178 GAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 38237 || | ||| || | | ||||||| | | |||||| |||||||||| || | Sbjct 7868 CAGCGAGTAGCCACCGATAATCTGCGAGATCAGCATCACCTGTTCCTGGTAGACAATCAC 7927 Query 38238 CCCGAAGGT 38246 |||| |||| Sbjct 7928 CCCGTAGGT 7936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159700956398820