Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_029013.1
Length=177688
Score E
Sequences producing significant alignments: (Bits) Value
seq2257 201 1e-46
>seq2257
Length=8409
Score = 201 bits (222), Expect = 1e-46
Identities = 309/438 (71%), Gaps = 2/438 (0%)
Strand=Plus/Minus
Query 77157 TTGATTAAACGCTTATACATCAAATCGTTAAGCTGAACGCCATAATCCAGGTGACGAATA 77216
||||| | |||| |||| ||| ||| | |||||| || || |||| ||||||||||
Sbjct 5909 TTGATCAGGCGCTGGTACAGCAAGCGGTTGATCTGAACACCGTAGTCCAAGTGACGAATA 5850
Query 77217 CGGTTATTCTCAACACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGC 77276
||||| | || ||||| |||||| |||||||||||||| |||| ||||||| |||
Sbjct 5849 CGGTTTTCTTCCACACCACGGTTGTTCTTCAGAACCAGCAGTGTTTCCACTTCCAGGTGC 5790
Query 77277 CAGATCGGATAATACAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATTTA 77336
|| || || || |||| ||||| ||||||||||| ||||| ||||| || ||||| ||
Sbjct 5789 CACATGGGGTAGAACAAGGTTGCCGCACCACCACGCACGCCGCCTTGCGAGCAGGACTTC 5730
Query 77337 ACCGCTGTCTG-AATATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCACC 77395
||||| | ||| || || || ||||||| | || || ||| ||||||||||||
Sbjct 5729 ACCGCAGCCTGGAACATCTTGA-AGAACGGCAGGCAACCCGTGTGTTGTGCTTCACCACC 5671
Query 77396 ACGGATTTTAGAACCCATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTG 77455
||| |||| || | ||||||||| | ||| |||| | ||||||||| || || ||
Sbjct 5670 ACGAATTTCGCTGCCTACGGCGCGAATGCGGCCACCATTGATACCGATACCGGCACGCTG 5611
Query 77456 TGAAATATACTTCACGATCGCAGAGGTTACAGCATTCAGAGAACCCAGTGAATCACCTGA 77515
||| | || || || || ||| ||||| | |||| || | |
Sbjct 5610 TGACACGTAACGAACAATGGCGCTGGTCGTGGCATTGATGCTGTCCAGGCTGTCGTCACA 5551
Query 77516 TTCAATCACTACGCAACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCATAATAGG 77575
||| |||| |||||| | ||||| || || || || ||||| || ||||| || ||
Sbjct 5550 TTCGATCAGCACGCAAGAGCTGAACTGGCGAGTGGGTGTGCGCACGCCAGCCATGATGGG 5491
Query 77576 CGTAGGTAACGACAGCTT 77593
||| || || || | |||
Sbjct 5490 CGTGGGCAAGGAAATCTT 5473
Score = 102 bits (112), Expect = 9e-17
Identities = 194/283 (69%), Gaps = 2/283 (1%)
Strand=Plus/Minus
Query 75554 GTGAATTGTTTCACTGAAAGCCCATGTTTCGATCCACGTTTCCAT-TGAAACATCAGAGG 75612
|||||| || || ||||||||| ||||| ||||| ||||||| | ||| ||
Sbjct 7515 GTGAATCGTCTCGGAGAAAGCCCAGGTTTCAATCCAGGTTTCCAGCTCCGGAATC-GATA 7457
Query 75613 CAATCGGGAGAAACGCCAGGTTAGGGCCGCGTCCCTGAATGGTATCTAACAGGGTTTGAT 75672
| | || || || |||| ||| |||| ||| ||||| |||| ||| | || ||| ||||
Sbjct 7456 CCAAAGGCAGGAAGGCCACGTTGGGGCTGCGGCCCTGGATGGAATCCAGCAAGGTCTGAT 7397
Query 75673 ATTGCAGGTTAGAATCAAAAATGATTTTTTCGTGTTCCGGCATTTTTGCATACTGCATAC 75732
| | ||| || |||||| |||||||| || |||| || ||| | || |
Sbjct 7396 ACTTCAGATTGCTGATGAAAATGTGCTTTTCGTGGTCAGGCAGGTTCTGATAGTCGATCC 7337
Query 75733 GGTCTATCGACAGATCCACTTCTTCCGGTCGCCAGAAGAATGACAGTTGTTTTTCAGTCA 75792
|||| | | |||||||| ||||| ||||||||||| |||| || |||||| |||
Sbjct 7336 GGTCCTGGGTAATGTCCACTTCCTCCGGACGCCAGAAGAAGGACAACTGCTTTTCAATCA 7277
Query 75793 AAGTTTCGAATACGCGATGTTTTTGTTCTTCATATCGGGCAAC 75835
|||| || | ||| |||||| | || || || || ||
Sbjct 7276 GCTTTTCAAAAATCGGATATTTTTGCTGGTCGTAGCGAGCCAC 7234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568420234540800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |