Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2290 95.1 1e-14 seq6693 84.2 2e-11 >seq2290 Length=1989 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||||| || ||||||||||| || || || ||||| ||||| || | Sbjct 903 TGGGCCATCATGTGGGTCAGCAGAGCGTAGCTGGCGATATTGAAGGGCACACCCAGGAAA 962 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || | || || ||||||||||||||||||| |||| || || ||||| ||| Sbjct 963 ATATCCGCACTGCGCTGGTAGAGCTGGCAGGACAGCTTGCCATCGGCTACATAGAACTGG 1022 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 | |||| |||||| ||||| || |||||| Sbjct 1023 AACAGGGCGTGGCAAGGGGGCAGAGCCATC 1052 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||||| || ||||| |||||| |||| | ||| ||||| || || |||| ||||||| Sbjct 1052 GATGGCTCTGCCCCCTTGCCACGCCCTGTTCCAGTTCTATGTAGCCGATGGCAAGCTGTC 993 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||| || || | || || | || ||||| ||||| || || || Sbjct 992 CTGCCAGCTCTACCAGCGCAGTGCGGATATTTTCCTGGGTGTGCCCTTCAATATCGCCAG 933 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||||||||| || ||||||| || || Sbjct 932 CTACGCTCTGCTGACCCACATGATGGCCCA 903 >seq6693 Length=129131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 170/248 (69%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 34181 GTGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAA---TTTCCGCTGCTGACGACG 34237 |||||||| | ||| | ||||| || || | || | || || || ||||||||| Sbjct 98311 GTGTTCGGAATGCAGTCGAGATACTCGCTGCGTGACGGAACCTTGCCACTTCTGACGACG 98370 Query 34238 AAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACG 34297 || || || | ||||||||| | | |||||||| |||||||| | | || | |||| Sbjct 98371 AAGCGGGTCTTCTGGAAGGGTATCCTGGAGGAGCTCTTGTGGTTCATCCGTGGCGACACG 98430 Query 34298 AACACCAAGGAGCTCTCGTCCCG--GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAG 34355 || | ||| | || | | || ||| || ||||||||||| | | || || || | Sbjct 98431 AATGCAAAGCA-CT-TGAGCGCGAAGGGCGTCAAGATCTGGGAGCCGAATGGCTCGCGCG 98488 Query 34356 ACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACG 34415 ||| || ||||| | || ||| | || |||||||||| |||| ||||| || | Sbjct 98489 CCTTCCTCGACAACCTCGGATTCACCGAACGCCAGGAGGGCGATCTGGGGCCGGTTTATG 98548 Query 34416 GGTTCCAG 34423 | |||||| Sbjct 98549 GCTTCCAG 98556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 170/248 (69%), Gaps = 7/248 (3%) Strand=Plus/Minus Query 6922 CTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTC 6981 |||||| || || ||||| |||| |||||||||| || | ||| || | ||||| Sbjct 98556 CTGGAAGCCATAAACCGGCCCCAGATCGCCCTCCTGGCGTTCGGTGAATCCGAGGTTGTC 98497 Query 6982 CAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC--CGGGACGAGAGCTCC 7039 || ||| | || || || | | ||||||||||| || ||| || | | || | | Sbjct 98496 GAGGAAGGCGCGCGAGCCATTCGGCTCCCAGATCTTGACGCCCTTCGCGCTCA-AG-TGC 98439 Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099 || | |||||| | || | | |||||||| |||||||| | | ||||||||| | Sbjct 98438 TTTGCATTCGTGTCGCCACGGATGAACCACAAGAGCTCCTCCAGGATACCCTTCCAGAAG 98379 Query 7100 ACACGTTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTGTG 7156 || || ||||||||||| || || || | || | || || ||||| | ||| | Sbjct 98378 ACCCGCTTCGTCGTCAGAAGTGGCAAGGTTCCGTCACGCAGCGAGTATCTCGACTGCATT 98319 Query 7157 CCGAACAC 7164 |||||||| Sbjct 98318 CCGAACAC 98311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448220319367200