Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq2066 113 3e-20
seq5063 105 5e-18
>seq2066
Length=2850
Score = 113 bits (124), Expect = 3e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | ||||| || |||||||| |||||||| || || ||
Sbjct 2154 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTCG 2095
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| ||||| | || |||||||||
Sbjct 2094 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAA 2035
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || ||||| || ||||| || || | ||||| | || ||||||
Sbjct 2034 CAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCGGACTACAAC 1975
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || || |||||||| | || || |||
Sbjct 1974 ATCCAGAAGGAGTCCACCCTCCACTTGGTT 1945
Score = 105 bits (116), Expect = 5e-18
Identities = 152/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || ||||| || ||| | || || || ||||| ||||||||||| || | |
Sbjct 211 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACGATAACTCTCGAAGTCGAAGCTTC 152
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||||| |||| ||| | || | || | || ||||| ||||| | || |||||||
Sbjct 151 TGACACCATTGAGAATGTCAAGGCGAAGA-TTCAAGACAAGGAAGGCATTCCCCCAGATC 93
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
||||||| | || || ||||| || ||||| || || | |||||| | || ||||
Sbjct 92 AACAGCGCCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCGGACTACA 33
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820
|||| || || |||||||| | || || |||
Sbjct 32 ACATCCAGAAGGAGTCCACCCTCCACTTGGTT 1
Score = 98.7 bits (108), Expect = 7e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || ||||||||||||||||| || || |
Sbjct 1070 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACGATCACTCTCGAAGTCGAAGCCTCC 1011
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || || ||||| || || | || ||||||||
Sbjct 1010 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCAG 951
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| || | || || ||||| || || || ||||||| ||| || | || ||||||
Sbjct 950 CAACGCCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGACGAACCCTCTCGGACTACAAC 891
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||||||
Sbjct 890 ATCCAGAAGGAGTCCAC 874
Score = 98.7 bits (108), Expect = 7e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | ||||| || |||||||| |||||||| || || ||
Sbjct 1659 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACGATCACCCTCGAAGTCGAAGCCTCG 1600
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| ||||| | || |||||||||
Sbjct 1599 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAA 1540
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| | || || ||||| || || || || || | ||||| || || ||||||
Sbjct 1539 CAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACATTGTCGGACTACAAC 1480
Query 23791 ATACAAAAAGAGTCCAC 23807
|| ||||| || || ||
Sbjct 1479 ATCCAAAAGGAATCGAC 1463
>seq5063
Length=4177
Score = 105 bits (116), Expect = 5e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || || ||||| || || |||||||| |||||||| || || |
Sbjct 2438 AATGCAAATCTTTGTGAAGACTCTCACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTC 2379
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || | | || || || ||||||||||| | || ||||||||
Sbjct 2378 CGACACGATCGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCA 2319
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || || ||||| || ||||| || || | |||||| | ||| |||||
Sbjct 2318 ACAGCGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTTTCCGACTACAA 2259
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 2258 CATCCAGAAGGAGTCTAC 2241
Score = 95.1 bits (104), Expect = 8e-15
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||||| || || || |||||||| |||||||| || || |
Sbjct 2813 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACGATCACCCTCGAAGTCGAAGCCTCC 2754
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| ||||| | || |||||||||
Sbjct 2753 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAA 2694
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || ||||| || ||||| || || | ||||| | || ||||||
Sbjct 2693 CAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCGGACTACAAC 2634
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || || || ||
Sbjct 2633 ATCCAGAAGGAATCGAC 2617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337978662615080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |