Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq4924 138 9e-28 seq2290 96.9 3e-15 >seq4924 Length=20857 Score = 138 bits (152), Expect = 9e-28 Identities = 140/182 (77%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 29693 TGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAG 29752 ||||||||||| || | || || || || || || ||||||| ||||||||| Sbjct 509 TGGACAAACTCACC----TTTAAGCCAGTCACATGCGCGATCATGTGAGTGAGGAGACCA 454 Query 29753 TAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGG 29812 |||||||||||||| |||||||| || || |||| || || || | |||||| || || Sbjct 453 TAGCTGGCGATGTTGAAGGGCACTCCAAGGGCCATATCGCCGGAACGCTGGTATAGTTGA 394 Query 29813 CACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCC 29872 ||||| || || |||||||| || || ||||||||||||| ||||||||| || | ||| Sbjct 393 CACGACAGTTCCCCGTCGCTTACATAGAACTGACACATGGTATGGCACGGTGGCAATGCC 334 Query 29873 AT 29874 || Sbjct 333 AT 332 Score = 109 bits (120), Expect = 4e-19 Identities = 119/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 29695 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29754 ||||||||| || | || || || || || || ||||||| || || ||| || Sbjct 728 GACAAACTCACC----TTTAAGCCAGTCACATGTGCTATCATGTGGGTTAGAAGACCATA 673 Query 29755 GCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 |||||| ||||| |||||||| || || |||| || || || | |||||| | |||||| Sbjct 672 GCTGGCTATGTTGAAGGGCACTCCAAGGGCCATATCGCCGGAACGCTGGTACAACTGGCA 613 Query 29815 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGG 29852 ||| || || || ||||| ||||| ||||||||||||| Sbjct 612 CGACAGTTCGCCATCGCTGACGTAGAACTGACACATGG 575 >seq2290 Length=1989 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 || |||||||||| || || |||| |||||||||||| || |||||||| || || Sbjct 903 TGGGCCATCATGTGGGTCAGCAGAGCGTAGCTGGCGATATTGAAGGGCACACCCAGGAAA 962 Query 29786 ATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 29845 || ||| | | ||||||||||||||| || |||| || ||| || || ||||| Sbjct 963 ATATCCGCACTGCGCTGGTAGAGCTGGCAGGACAGCTTGCCATCGGCTACATAGAACTGG 1022 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905 ||| ||| ||||| || || || ||||| | |||| || ||||||||| | Sbjct 1023 AACAGGGCGTGGCAAGGGGGCAGAGCCATCTGGCCCACATCCGCCACGTTCCAGGCCGAG 1082 Query 29906 ACGATGATGCG 29916 ||||| | ||| Sbjct 1083 ACGATCAGGCG 1093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406126024643860