Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5063 123 2e-23 seq2066 123 2e-23 seq4834 113 4e-20 >seq5063 Length=4177 Score = 123 bits (136), Expect = 2e-23 Identities = 120/152 (79%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||| || || ||| ||||||||| ||||| ||||||||| Sbjct 1668 CCACCGCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1727 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| |||| |||||||||||||| || || ||||||||||| || || | || Sbjct 1728 AGAGTGCGCCCGTCTTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCGGGTGGG 1787 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 | | |||||||||| ||| | || | ||||| Sbjct 1788 ATTCCCTCCTTGTCC-TGAATCTTGGCCTTCA 1818 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || ||| ||||||||| || || ||||| ||| Sbjct 1898 CCACCGCGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAG 1957 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || |||||| |||| ||||||||||| ||||| || || |||||||| || || | || Sbjct 1958 AGAGTGCGCCCGTCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGCTGCTGATCGGGTGGG 2017 Query 41756 ACGCTCTCCTTGTCC 41770 | | |||||||||| Sbjct 2018 ATTCCCTCCTTGTCC 2032 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||| || || ||| ||||||||| ||||| ||||| ||| Sbjct 3154 CCACCGCGGAGTCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 3213 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| ||||| || || ||||| || ||||| | ||| Sbjct 3214 AGGGTACGTCCGTCTTCGAGCTGCTTTCCGGCAAAGATGAGGCGTTGCTGGTCTGGGGGG 3273 Query 41756 ACGCTCTCCTTGTC 41769 | | |||||||| Sbjct 3274 ATTCCTTCCTTGTC 3287 >seq2066 Length=2850 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||||| || || ||| ||||||||| ||||| ||||| ||| Sbjct 844 CCACCGCGAAGTCGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAG 903 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| |||||||| || ||||| || || || | ||| Sbjct 904 AGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGG 963 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | | ||||||||| ||| || ||| |||| | || |||||| | || Sbjct 964 ATTCCCTCCTTGTCTTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCGGAGGCTTC 1019 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | || ||||| || || ||||| ||||| ||||| ||||||||| Sbjct 1020 GACTTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 1071 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||||| || || || ||||| || ||||| ||||| || Sbjct 1433 CCACCGCGAAGTCGGAGAACCAGGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAC 1492 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || ||||||||||| |||||||| || ||||||||||| || | |||| Sbjct 1493 AATGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGA 1552 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||| | | | ||||| | || || Sbjct 1553 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCCGAGGCTTCGACT 1612 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || ||||| || ||||||| ||||| ||||| ||||||||| Sbjct 1613 TCGAGGGTGATCGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATG 1660 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || |||||||| ||||| ||||| ||| Sbjct 1205 CCTCCACGGAGTCGAAGGACCAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAG 1264 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| |||||||| || ||||| || || || | ||| Sbjct 1265 AGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGATCTGGGGGG 1324 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||| | | | || || | |||||| Sbjct 1325 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGCCTCCACT 1384 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || ||||| || || ||||| ||||| ||||| || ||||| Sbjct 1385 TCGAGGGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 1431 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||| ||||||||| ||||| ||||| || || ||||| | || ||| Sbjct 2 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCG 61 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| |||||||| || ||||||||||| || | ||||| || ||||||| | || Sbjct 62 AGTTGCTTTCCGGCGAAGATGAGGCGCTGTTGATCTGGGGGAATGCCTTCCTTGT-CTTG 120 Query 41774 ATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || | ||| | | | ||||| | || || || | |||||||| || Sbjct 121 AATCTTCGCCTTGACATTCTCAATGGTGTCAGAAGCTTCGACTTCGAGAGTTATCGTCTT 180 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| ||||| || ||||| Sbjct 181 GCCAGTCAAGGTCTTCACGAAGATTTGCAT 210 >seq4834 Length=88581 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||| || || ||| ||||||||| ||||| |||||||| Sbjct 22318 CCGCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAT 22377 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| ||||||||||| |||||||| || ||||| || ||||||| || Sbjct 22378 AACGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGAGGG 22437 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||| | | ||| | || | ||||| | | ||| || | || || Sbjct 22438 ATGCCTTCCTTAT-CTTGAATCTTCGCCTTCACGTTCTCGATAGTATCCGAGGCTTCGAC 22496 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || || |||||||| ||||| ||||||||| Sbjct 22497 TTCAAGGGTGATTGTCTTCCCGGTAAGCGTCTTCACGAAGATCTGCATG 22545 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||||||||| ||||| || Sbjct 21113 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCTGAA 21172 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||| || ||||| || || |||||||||||||| | || Sbjct 21173 AGAGTACGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATGAGGCGCTGTTGGTCGGGAGGG 21232 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||| | | ||| | || | ||||| | | ||||| | || || Sbjct 21233 ATGCCTTCCTTAT-CTTGAATCTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCTTCGAC 21291 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || || |||||||| || || || |||||| Sbjct 21292 TTCGAGGGTGATGGTCTTTCCGGTGAGCGTCTTGACAAAGATTTGCATG 21340 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 22545 GCCACCACGGAGACGGAGGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 22604 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGG 41746 | ||||| |||| ||||||||||| |||||||| || ||||| || ||| Sbjct 22605 TAAAGTGCGACCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGTTGCTGG 22656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462260601212000