Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2468 100 3e-16 seq2527 98.7 1e-15 >seq2468 Length=4028 Score = 100 bits (110), Expect = 3e-16 Identities = 387/601 (64%), Gaps = 8/601 (1%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAA-GACGTA 16856 ||| || ||| |||| || || | | |||| | | || ||||| || || | | || | Sbjct 2943 ATCAGCAACATATTCGATGTACTTGGACATGAGAACACAATTCATACCGATCATGTCG-A 3001 Query 16857 CCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAG 16916 | ||||| | || || | || |||||||||| || |||||| || || | Sbjct 3002 CAGGAAGGGACTCGGTGAGGTATTCTTGCTCTATATGCACAGCTTCCCGTATGATTTCAT 3061 Query 16917 CAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGC 16976 ||| | || | | || | || | ||| | ||| |||||| |||||||||||| | Sbjct 3062 ACACTTGCTCGTTGCTAGGCTTCTGGTCAAGGTATTTGTACATCAAACATGCGAAATCTC 3121 Query 16977 AATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTC 17036 ||| | ||| || |||| || ||||| || |||||||| ||||| || Sbjct 3122 GATGGAGTCCTTCATCTCGTGAAATTAGTTCATTGCTGTGAGTCAACCCAGGCATGAGTC 3181 Query 17037 CTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 | || ||||| |||||||| || || || ||||| || || || || || || || |||| Sbjct 3182 CACGCTTCTTCAACCAAAAAATGGCAGCAAACGATCCGGAGAAAAAGATTCCTTCCACGG 3241 Query 17097 ATGCAAACGCGATTAATCG--TTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTG 17154 ||||| ||||| | || ||| | ||| || | || | | ||||||| | Sbjct 3242 CAGCAAAAGCGATCACGCGAATTC--CAAACGAAGCATTCTTATCTCCAATCCATCGGAG 3299 Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTC 17214 |||| |||||||| | ||| ||||| | | || || || ||||| | | | Sbjct 3300 AGCCCAGTCGGCTTTCTTCTTAATGCAGGGAAACTCTTGAATAGCATTAAAGAGCGTGTT 3359 Query 17215 TTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTAT 17274 | || ||| ||| | | || | ||||| | ||||| ||||| || || Sbjct 3360 CCTCTCAGTTAGATCGGTAACGTATGCTTCGATCATCTTTGAATACATCTCGGAATGAAT 3419 Query 17275 GTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC-A 17333 || | ||| ||||| || | ||| || | | ||||| | || | |||||| Sbjct 3420 TCCTTCGACGGCAATCTGGAAACTGTAGAACGAGAGCGCTTCAGGCATCTTCACTTCCTG 3479 Query 17334 CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 ||| ||||| || | ||||||||||| ||||| || || || || |||||||||| Sbjct 3480 TGTA-AATCGCTCAACGAGATTTTCGTTTACGATTCCATCTGAAGCAGCAAAAAACGCCA 3538 Query 17394 A 17394 | Sbjct 3539 A 3539 >seq2527 Length=10055 Score = 98.7 bits (108), Expect = 1e-15 Identities = 219/329 (67%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 16778 CCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAG 16837 |||||||| | | ||| ||| || ||| |||| |||||||| |||| | | || Sbjct 5752 CCCAGTTCAGTTAATAAGTGATCAGCAACATATTCAATATATTGCGACATGAGTCGACAA 5693 Query 16838 TTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACC 16897 ||||| || || | | || ||||||||||| || | | | || || || ||| Sbjct 5692 TTCATACCAATCATATCCACTGGAAGAGCTTCGGTTAGATACTCCTGTTCGATTTGAACA 5633 Query 16898 GCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 ||||| ||||| | ||| | || || | ||| | |||| |||| || || Sbjct 5632 GCTTCACGTATAATTTCACACACTTGCTCTTCTGTTGGTTTTTGTTCGAGATACTTGTAC 5573 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 | || ||| || ||||| | ||| | ||| || ||||| || | |||||| | Sbjct 5572 ACCAAACACGCAAAATCTCGATGGAGTCCTTCATCTCTTGAAATTAACTCGTTACTGTGT 5513 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 ||||| || ||||| ||| |||||||| | |||||| || || || ||||| ||||| Sbjct 5512 GTCAAACCCGGCATAAGTCCACGTTTCTTCAGCCAAAAAATTGCAGCAAACGAGCCAGAG 5453 Query 17078 AAGAATATACCCTCGACGGATGCAAACGC 17106 || || || || || || | ||||| || Sbjct 5452 AAAAAGATTCCTTCCACTGCAGCAAATGC 5424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517453399251360