Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6327 165 1e-35 seq2468 129 7e-25 >seq6327 Length=14581 Score = 165 bits (182), Expect = 1e-35 Identities = 342/504 (68%), Gaps = 19/504 (4%) Strand=Plus/Minus Query 53411 TTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTC 53470 |||||||||| |||| | ||||| | ||||| | ||||||||||| ||||| || Sbjct 7292 TTCTCAGCTAATTCAGAGGATGCCTCAAGAGCACCATGGTAAATGGTTTCAAAGATTCTC 7233 Query 53471 TTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCT 53530 || || ||||| | |||| | ||| || ||||| | | || || || ||| Sbjct 7232 TTGTTGAGATCACGAGCTTGAGGACTAGTGAACGGATACCGCATCAACATGAAAGCATCT 7173 Query 53531 GCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCT 53590 ||||| |||||||| || || || || || | ||| | ||| || || |||||||||| Sbjct 7172 GCTAAACCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATGTTTCAGCTTCG 7113 Query 53591 GGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT---TCTGACAATTACTTTG 53647 |||| ||||| |||| || |||||||| || ||||| | ||||| || ||| Sbjct 7112 GGAACCGGATAGAAATTGCAGTCGATAATTTTGTTAAGGTTACGTGTGACA---ACCTTG 7056 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTTCAA 53703 | | | || || ||||||| |||| | ||| | || || ||||| Sbjct 7055 GTAATTGCATGAAGCTTTTCGTAATCAAAAGTTTTGT-CTTCTTTGACGAATCGGTTCAG 6997 Query 53704 TGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 53763 ||||| || || | ||| ||||| || || |||| || | || || || | || || Sbjct 6996 AGCAATCGAAGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTC 6937 Query 53764 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 53823 || || ||||| |||||| || ||||| | ||||| ||||| |||| | || || Sbjct 6936 CGTACAGAGATTGGAACACTTAATAGTTCCAAGATTTTTCTGATTCGACTTTCTATTGCA 6877 Query 53824 CGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTT 53883 ||||| || ||||| ||| | || ||||||||||||| || | || ||| || ||| Sbjct 6876 AGCATCTTTGTAAAGCATGTACGGTATACCAGTTTCAATTTGCG---CTGTAA-CGATTT 6821 Query 53884 ----CCAGACGACACGAGCCTTTA 53903 ||||| | ||||||| |||| Sbjct 6820 CCTCCCAGAGGGCACGAGCTTTTA 6797 Score = 140 bits (154), Expect = 4e-28 Identities = 327/482 (68%), Gaps = 16/482 (3%) Strand=Plus/Minus Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 ||||| || |||||||| | ||| | || || ||||| || |||| | ||| ||||| Sbjct 5941 TTGTTACCGCCCTGATCGACGTAACGTGCAGTATTATTGTACACTCGGAGCATAGGAATC 5882 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAAT--ATTA 54295 | |||||| |||| ||||||||| || | || || | ||||| || ||||| | | Sbjct 5881 AAACCATTCGATGTACCATTGGTTCCAGCAATCATTG-TTCCAGATGCGCGAATGCAATG 5823 Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 54355 ||| ||| || || || ||||| || || || | || || | | || Sbjct 5822 TGCATT--TAGGCCAATACCACCTGCTGACTTTGAAATGAGGGCACACTGCCAAAGAGTC 5765 Query 54356 TCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGA---CAT 54411 | |||| || || || ||| || ||| || ||| ||||| || ||| ||| Sbjct 5764 TTGAAGATCCCATCAATTGAATCGTCATGCATCGTCAAG-AGAAAGCA---AGAGCTCAT 5709 Query 54412 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 54471 ||| | || |||||| ||||| || | || |||||||| || || ||||| || Sbjct 5708 TTGTGGTTTACAAGTTCCTGCATTGAAAAGTGTGGGAGAAGCATGAGTGAACCAGCGATC 5649 Query 54472 AGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTG 54530 || | | |||||| || |||||||| | || ||||| | ||| |||||||| || | Sbjct 5648 GGACATCAAATTGTAGGTTTCGATAGCGGCCTCGATATCTTCCTTG-TGAATTCCAACGG 5590 Query 54531 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGT 54590 |||||||||| | || || ||||| | ||||| | | | |||||| | ||| | Sbjct 5589 CGACACGCATAAGCAAATGTTGAGGACGCTCAACAACCCGTCCATCTATTTTTAACAAAT 5530 Query 54591 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 54650 | || ||||||||||| ||||| |||||| ||||||| || ||||| || || | || Sbjct 5529 ATGACCGCTCCAAAGTTTTGAAACCGAAATAGGTGTATGAGAAATCTCGGTCATACACAA 5470 Query 54651 TA 54652 || Sbjct 5469 TA 5468 Score = 127 bits (140), Expect = 2e-24 Identities = 322/481 (67%), Gaps = 14/481 (3%) Strand=Plus/Minus Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 ||||| || || ||||| | ||| | ||| || ||||| || |||| | ||| || || Sbjct 4561 TTGTTACCGCCTTGATCGACGTAACGAGCAGTATTATTGTACACTCGGAGCATAGGGATT 4502 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAAT--ATTA 54295 | |||||| |||| |||||||| || | ||| || | ||||| || ||||| | | Sbjct 4501 AAACCATTCGATGTTCCATTGGTTCCAGCGATCATTG-TTCCAGATGCGCGAATGCAATG 4443 Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 54355 | ||| |||||| || || ||||| || || || | || || | | || Sbjct 4442 CGCATT--TAGACCAATACCACCTGCTGACTTCGAAATAAGGGCACACTGCCAGAGAGTT 4385 Query 54356 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA---CATT 54412 | || || || || || ||| || ||| | || || || || ||| |||| Sbjct 4384 TTGTAAATCCCATCAATTGAATCGTCATGCATCGTCAGGAGGAAGCA---AGAGCTCATT 4328 Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 || | | |||||| ||||| || | ||||||||||| || || ||||| || Sbjct 4327 TGTGGTTTGCAAGTTCCTGCATTGAAAAGTGTAGGAGAAGCATGAGTGAACCAGCGCTCG 4268 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGC 54531 || | | |||||| || |||||||| | || ||||| | ||| |||||||| || || Sbjct 4267 GACATCAAATTGTAGGTTTCGATAGCGGCATCGATATCTTCCTTG-TGAATTCCAACAGC 4209 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591 ||||||||| | || || ||||| | || || | || | ||||| | ||| || Sbjct 4208 GACACGCATAAGCAAATGTTGAGGACGCTCGACAACCTGTCCATCCATTTTTAACAAATA 4149 Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 || ||||||||||| ||||| ||||| ||||||| || || || || || | ||| Sbjct 4148 TGACCGCTCCAAAGTTTTGAAACCGAAATATGTGTATGAGAAATCCCGGTCATACACAAT 4089 Query 54652 A 54652 | Sbjct 4088 A 4088 Score = 114 bits (126), Expect = 2e-20 Identities = 249/371 (67%), Gaps = 5/371 (1%) Strand=Plus/Minus Query 53537 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 53596 |||||||| || || || || || | ||| | ||| || || |||||||||| |||| Sbjct 6677 CCTTGAACTCCGATTCCAATTGGGCGATGACGCTTGTTTGATCTTTCAGCTTCGGGAACC 6618 Query 53597 GGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCC 53656 ||||| ||||| || ||||| || || ||||| | || || ||| | | Sbjct 6617 GGATAGTAATTGCAGTCAATAATCTTGTTAAGGTTACGTGTGATAACCTTGGTAATCGCA 6558 Query 53657 TTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTTCAATGCAATAGA 53712 | || || ||||||| ||||| ||| | || | ||||| ||||| || Sbjct 6557 TGAAGCTTTTCGTAATCAAAGGTTTTGTCT-TCTTTGACGCATCGGTTCAGAGCAATCGA 6499 Query 53713 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAG 53772 || | ||| ||||| || || |||| || | || || || | || |||||||| || Sbjct 6498 AGCTAAATTGCAAACAGCGACTTCATCAGGAGACGAGTACTGCACGATTTCAGTGCAGAG 6439 Query 53773 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 53832 ||| ||| || || ||||| | ||||| || || |||| | || || ||||| || Sbjct 6438 ATTGGAACATTTAATAGTTCCAAGATTTTTCTGGTTCGACTTTCTATTGCAAGCATCTTT 6379 Query 53833 ATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGAC 53892 || || ||| | || |||||||||||||| || ||| | || | | ||| | | | Sbjct 6378 GTAGAGCATGTAAGGTGTACCAGTTTCAATTTGCGATGTAACGATTTCCTCCCAAAGGGC 6319 Query 53893 ACGAGCCTTTA 53903 ||||||||||| Sbjct 6318 ACGAGCCTTTA 6308 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 54752 AAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 54811 |||||| ||||||| || ||| |||||||||| || || | |||||||| || Sbjct 3945 AAATCCGTCATCACGTCTGAGAATGCCTTTTTTGTTTGCTTATGCAAGTTTGATACAGCA 3886 Query 54812 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTC 54870 ||||||||||| ||||| || || || ||||| | ||||| || || ||||| |||| Sbjct 3885 ATTCTAGCGGCAAGAATCGCGTAGTCGGGATGACGGGTAGT-CATGTCAGCTGCAGTTTC 3827 Query 54871 GGCTGTCAGAGTGTC 54885 ||| |||||| |||| Sbjct 3826 GGCGGTCAGATTGTC 3812 >seq2468 Length=4028 Score = 129 bits (142), Expect = 7e-25 Identities = 300/450 (67%), Gaps = 17/450 (4%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||||||||||||||||||| | || || || || |||| ||||| ||| ||| Sbjct 3101 ACATCAAACATGCGAAATCTCGATGGAGTCCTTCATCTCGTGAAATTAGTTCATTG---- 3156 Query 24187 ACGTGAGT----CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 24242 |||||| || ||||| || |||||||| || | |||||| |||| ||||| ||| Sbjct 3157 CTGTGAGTCAACCCAGGCATGAGTCCACGCTTCTTCAACCAAAAAATGGCAGCAAACGAT 3216 Query 24243 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG 24302 || || || || |||||||| || || ||||| || || | | |||| | || Sbjct 3217 CCGGAGAAAAAGATTCCTTCCACGGCAGCAAAAGCGATCACGCGAATTCCAAACGAAGCA 3276 Query 24303 CTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 24359 | | || | ||||| ||||||| ||||| ||||| || | || || | | Sbjct 3277 TTCTTATCTCCAATCCATCGGAGAGCCCAGTCGGCTTTCTTCTTAATGCAGGGAA---AC 3333 Query 24360 TCT---ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 ||| |||||||||||||| ||| | ||| | ||| |||| |||| || ||| Sbjct 3334 TCTTGAATAGCATTAAAGAGCGTGTTCCTCTCAGTTAGATCGGTAACGTATGCTTCGATC 3393 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | |||||| || |||||||| ||| | ||| || || || | |||||| | Sbjct 3394 ATCTTTGAATACATCTCGGAATGAATTCCTTCGACGGCAATCTGGAAACTGTAGAACGAG 3453 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 || || | |||| ||||| |||||| || | | |||||| || || ||| Sbjct 3454 AGCGCTTCAGGCATCTTCACTTCCTGTGTAAATCGCTCAACGAGATTTTCGTTTACGATT 3513 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACA 24566 || || || |||||||||||||| ||| Sbjct 3514 CCATCTGAAGCAGCAAAAAACGCCAAAACA 3543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593615828496960