Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq10737 174 4e-39 seq2795 120 8e-23 >seq10737 Length=14001 Score = 174 bits (192), Expect = 4e-39 Identities = 666/1029 (65%), Gaps = 35/1029 (3%) Strand=Plus/Plus Query 14773 ACTGAGGTGATTGACGCCAAGTTACGATATCCAAACACAGCGCTACTCTACATCGAATTC 14832 || |||||||||||||| || | | || || | || || || | | | | | || Sbjct 8495 ACCGAGGTGATTGACGCTAAACTGAGTTACCCCGAAACCGCCTTATTGTTCGTTCAGTTT 8554 Query 14833 GATTCAAGTCAGTTTAACGGCTCTATCCCGCAGATCTCCTGCGAGCCCCGCGGCCGTGTT 14892 ||| | | ||||| | || |||||||||| ||||||| || ||| || || Sbjct 8555 GATGCCAAACAGTT---CCGCAATATCCCGCAGGTCTCCTGTGAACCCAAAATGCGCATT 8611 Query 14893 ATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGT 14952 ||||| || || |||| || || || || ||||| ||| || ||| | || Sbjct 8612 ATCCGGGTGCCGGATAATTATGATCCGGACCGTCGCACCTATTCGGGGGTGTGGGCAGGG 8671 Query 14953 GCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGATCTGGTTGTTTCT 15012 || ||||| ||||| ||||| || || || |||||||| | || || ||| | | | Sbjct 8672 GCCTTTAAATGGGCGTGGACAGACAATCCGGCGTGGATACTGTATGACCTGATGATCAAT 8731 Query 15013 GACCGGTTCGGCCTCGGGCACCGTTTGACCGCTGCGAATATTGAT------AAATGGACG 15066 ||||||||| || | || ||| ||| |||| |||| | | |||||| Sbjct 8732 GACCGGTTCAGCATTGGTACCCGGGTGAAAGCTGAGAATCTGGCGCTGGCAAAATGGGAC 8791 Query 15067 CTTTATCAGGTTGCCCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGT 15126 || || | |||||| | | ||||| ||| ||| || || ||||||||||| | || Sbjct 8792 CTGTACCGCATTGCCCGGCACTGTGACCAGCCGGTGCCGGATGGCAAAGGGGGGAT-GGA 8850 Query 15127 ACCGAACCACGTTATACCTGCAACGTGTACATCCAGGACCGAAACGACGCTTATACAGTC 15186 |||| ||| |||||||| || || || ||| | | | ||||| | || ||| Sbjct 8851 GCCGAGACAC-----ACCTGCAATGTCTATATTCAGTCGCAAGAGGACGCCTGGACTGTC 8905 Query 15187 CTGCGTGATTTTGCGGCCATATTCCGTGGCATGACGTACTGGGGAGGCGATCAGATCGTT 15246 ||||| ||| ||| | || ||| |||||||| | ||||| | || | || | Sbjct 8906 CTGCGGGATATTGTCGGTATCTTCAACGGCATGACCTTCTGGGCGAACAATAACATGAAT 8965 Query 15247 GCTCTGGCCGATATGCCCCGAGATGTTGATTACAGCTACACGCGCGCCAACGTTGTTGGC 15306 | ||||| ||||||||||| || |||| | || ||| ||||||||||| | | Sbjct 8966 GTGCTGGCGGATATGCCCCGCACGGTGGATTTAAACTTCACCCGCGCCAACGTGCGGGAC 9025 Query 15307 GGTCGCTTCACCTATTCAAGCAGCACCACGAAAACCCGCTACACCACAGCGCTGGTTTCA 15366 ||| || |||||||| || || | |||||||| ||| |||| ||| |||| Sbjct 9026 GGTAAATTTACCTATTCCAGTGCCAGCGAGAAAACCCATTACTCCACGGCGATGGTGAGC 9085 Query 15367 TGGTCAGACCCGGGTAACGCTTATGCCGACGCGATGGAGCCGGTATTTGAGCAGGCGCTG 15426 |||||||| ||| |||| |||| || ||| |||| |||| || || | | | | Sbjct 9086 TGGTCAGATCCGCAGAACGGTTATCAGGATGCGGTGGAAGCGGTCTTCGACC---CTCAG 9142 Query 15427 GTA--GCG-CGATACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAG 15483 || ||| || || | || ||| ||| || || || || ||||||||| ||||| Sbjct 9143 TTAATGCGCCGGTATCAGGTGAAACAGGCGGACATCACCGCAATTGGCTGCACCCGGCAG 9202 Query 15484 TCAGAAGCGAACCGAAAGGGGCGCTGGGGCATTCT-CACCAACAACAAGGATCGCGTTGT 15542 || || | || | ||| ||| | | | |||||| | | || || | || Sbjct 9203 AGTGAGGCCCAGCG-GCGCGGCAAGTGGGTACTGTATACCAACCAGTATGACCGGATGGT 9261 Query 15543 TTCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAGCCTGGCTACATCATCGCCGTGGC 15602 | ||| || |||||||| || |||||| ||| || || || |||| ||||| Sbjct 9262 CACCTTTACCGTGGGGCTGGAGGGCCGAATTCCGTTGCCCGGTTATATTATCGGGGTGGC 9321 Query 15603 AGACG-AGCTGCTT-TCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGC 15660 || | ||| ||| ||||| || |||| || || |||||||| | | | || || Sbjct 9322 GGATGAAGC--CTTCTCCGGTCGCGTACTGGGTGGGCGTATCAGCGCGGCTGATGGACGT 9379 Query 15661 GTTATCAAACTTGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTT 15720 ||||| || ||| | || || ||| | || || || | || || ||||| Sbjct 9380 AATATCACGCTGGACAGAGTGTCTTCGGCACAAGTGGGCGAGCGGTTAATCCTGAACCTG 9439 Query 15721 CCCTCCGG-AGCGTCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAA---TCAGTCAC 15776 || || || | | || || | | || |||||||| ||||| ||||| | | |||| Sbjct 9440 CCGTCGGGCAAAGCCG-AGGGGCGCACTATTCAGGCGGTGAA--GGGAACGGTGA-TCAC 9495 Query 15777 AGTCACCAC 15785 |||||||| Sbjct 9496 GGTCACCAC 9504 Score = 89.7 bits (98), Expect = 1e-13 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 12009 ATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGTGCTGCGGTGTGGTGGCAC 12068 ||||||| ||| | ||||| | | | ||||| || ||| ||||| ||| ||||| | Sbjct 6521 ATGCGATCATGACTCATGCCGAAACCGAATACCCCAATGAATGCTGTGGTTTGGTGATTC 6580 Query 12069 AGAAGAGCCGGGTAGAGAAATATTTTCCATGTCGTAACCTCGCTACCGAGCCGACAGAAC 12128 | || || || | || ||||| | | || || || ||| || || || || | Sbjct 6581 AAAACAGTCGCAGACAGGAATATATCCGCTGCCGCAATGCCGCCCCCTCACCCACCGAGC 6640 Query 12129 ATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACGGTGATCGCCA 12188 | ||| ||| || ||||| || || || || || ||| || | | |||| Sbjct 6641 AATTTTGCCTCCATCCCGAAGATTACGCTAAAGCCGAAGATGCGGGGACTATTGTTGCCA 6700 Query 12189 TCGTTCACAGTCACCCTGACGCCACAACGCAGCCGAGCGAACTGGATAAAGCGCAATGCG 12248 |||| ||||||||||| |||||||| || ||||| ||| ||||||||| || ||||| | Sbjct 6701 TCGTCCACAGTCACCCGGACGCCACGACACAGCCCAGCCAACTGGATATCGCACAATGTG 6760 Query 12249 AC 12250 || Sbjct 6761 AC 6762 >seq2795 Length=11366 Score = 120 bits (132), Expect = 8e-23 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 35379 AATGGCTAACCTACGCAAAGAAGCGCGCGGCAGAGAATGCCAGGTACGTATTTACGGCGT 35438 |||||| || ||||||||||||||||| || ||||||| ||||| | || ||| | Sbjct 3919 AATGGCAAATCTACGCAAAGAAGCGCGGGGTCGAGAATGTCAGGTCAGAATACCGGGCAT 3860 Query 35439 ATGCAATGGTAATCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGG 35498 || || ||||| ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct 3859 CTGTAACGGTAACAGCGAAACGGTAGTTCTGGCTCATTACCGGATGGCTGGCATTTGTGG 3800 Query 35499 AACGGGAATGAAGCCTGAAGACCTGATCGGTGCATGGGCTTG-TAGTGACTGCCACGCGG 35557 | ||| ||||| || | || ||| | || |||||||| || | ||| || |||| | Sbjct 3799 CATGGGGATGAAACCCAATGATCTGTTTGGGGCATGGGCGTGTTCGTG-TTGTCACGATG 3741 Query 35558 AGATCGACCG 35567 | || ||||| Sbjct 3740 AAATAGACCG 3731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130259550816312