Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq10737 188 2e-43 seq2795 114 3e-21 >seq10737 Length=14001 Score = 188 bits (208), Expect = 2e-43 Identities = 668/1029 (65%), Gaps = 35/1029 (3%) Strand=Plus/Plus Query 15777 ACCGAGGTGATTGATGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCGAATTC 15836 |||||||||||||| || |||||| | ||||| | ||||| | | | ||| | || Sbjct 8495 ACCGAGGTGATTGACGCTAAACTGAGTTACCCCGAAACCGCCTTATTGTTCGTTCAGTTT 8554 Query 15837 GACTCAAGCCAGTTCAACGGCTCTATTCCTCAAATTTCATGCGAACCGCGCGGCCGCGTT 15896 || | | ||||| | || ||| || || | || || ||||| ||| || Sbjct 8555 GATGCCAAACAGTT---CCGCAATATCCCGCAGGTCTCCTGTGAACCCAAAATGCGCATT 8611 Query 15897 ATCCGCGTTCCAGATACCTACGACCCTGAAACCCGCACTTATAGCGGTACATGGACCGGT 15956 ||||| || || |||| || || || || ||||| ||| || ||| | || Sbjct 8612 ATCCGGGTGCCGGATAATTATGATCCGGACCGTCGCACCTATTCGGGGGTGTGGGCAGGG 8671 Query 15957 GCGTTTAAGTGGGCATGGACGGATAACCCTGCGTGGATTTTTTACGACCTGGTTGTTTCT 16016 || ||||| ||||| ||||| || || || |||||||| | || |||||| | | | Sbjct 8672 GCCTTTAAATGGGCGTGGACAGACAATCCGGCGTGGATACTGTATGACCTGATGATCAAT 8731 Query 16017 GACCGGTTCGGCCTTGGGCACCGTTTGACCGCTGCGAAT------ATTGATAAATGGACG 16070 ||||||||| || |||| ||| ||| |||| |||| | | |||||| Sbjct 8732 GACCGGTTCAGCATTGGTACCCGGGTGAAAGCTGAGAATCTGGCGCTGGCAAAATGGGAC 8791 Query 16071 CTTTATCAGGTTGCTCAGTATTGTGATCAGATGGTACCAGACGGCAAAGGGGGCAACGGT 16130 || || | |||| | | | ||||| ||| ||| || || ||||||||||| | || Sbjct 8792 CTGTACCGCATTGCCCGGCACTGTGACCAGCCGGTGCCGGATGGCAAAGGGGG-GATGGA 8850 Query 16131 ACAGAACCACGTTATACCTGCAACGTGTACATTCAGGACCGGAACGACGCCTACACAGTC 16190 | || ||| |||||||| || || |||||| | | ||||||| || ||| Sbjct 8851 GCCGAGACAC-----ACCTGCAATGTCTATATTCAGTCGCAAGAGGACGCCTGGACTGTC 8905 Query 16191 CTGCGTGATTTTGCCGCTATCTTCCGTGGCATGACCTACTGGGGCGGGGATCA---GATT 16247 ||||| ||| ||| || ||||||| |||||||||| ||||| || | || | Sbjct 8906 CTGCGGGATATTGTCGGTATCTTCAACGGCATGACCTTCTGGGCGAACAATAACATGAAT 8965 Query 16248 GTGGCCCTGGCTGACATGCCGCGCGATGTTGATTACAGCTATACGCGCGCTAACGTTGTT 16307 ||| ||||| || ||||| ||| || |||| | || || ||||| ||||| Sbjct 8966 GTG---CTGGCGGATATGCCCCGCACGGTGGATTTAAACTTCACCCGCGCCAACGTGCGG 9022 Query 16308 GGCGGTCGCTTCACCTATTCGAGCAGCACCACGAAAAGCCGCTACACCACAGCGCTGGTT 16367 | |||| || |||||||| || || | ||||| || ||| |||| ||| |||| Sbjct 9023 GACGGTAAATTTACCTATTCCAGTGCCAGCGAGAAAACCCATTACTCCACGGCGATGGTG 9082 Query 16368 TCATGGTCAGACCCGGGTAACGCTTATGCCGACGCGATGGAACCGGTATTTGAGCAGGCG 16427 |||||||| ||| |||| |||| || ||| ||||| |||| || || | | Sbjct 9083 AGCTGGTCAGATCCGCAGAACGGTTATCAGGATGCGGTGGAAGCGGTCTTCGACCCTCAG 9142 Query 16428 CTGGTGGCGCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAG 16487 | || ||||| | || ||| ||| || || || || ||||||||| ||||| Sbjct 9143 TTAATGCGCCGGTATCAGGTGAAACAGGCGGACATCACCGCAATTGGCTGCACCCGGCAG 9202 Query 16488 TCAGAGGCGAACCGAAAGGGGCGCTGGGGTATTCT-CACCAATAACAAGGATCGCGTTGT 16546 ||||| | || | ||| ||||| | | ||||| | | || || | || Sbjct 9203 AGTGAGGCCCAGCG-GCGCGGCAAGTGGGTACTGTATACCAACCAGTATGACCGGATGGT 9261 Query 16547 TTCGTTTGATGTCGGGCTGGACGGAAACATTCCGCAGCCGGGCTACATCATCGCCGTGGC 16606 | ||| || |||||||| || |||||| ||| || || || |||| ||||| Sbjct 9262 CACCTTTACCGTGGGGCTGGAGGGCCGAATTCCGTTGCCCGGTTATATTATCGGGGTGGC 9321 Query 16607 AGACG-AGCTGCTT-TCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGC 16664 || | ||| ||| ||||| || |||| || || |||||||| | | | || || Sbjct 9322 GGATGAAGC--CTTCTCCGGTCGCGTACTGGGTGGGCGTATCAGCGCGGCTGATGGACGT 9379 Query 16665 GTTATCAAACTTGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTG 16724 ||||| || ||| | || || ||| | || || || | || || |||||| Sbjct 9380 AATATCACGCTGGACAGAGTGTCTTCGGCACAAGTGGGCGAGCGGTTAATCCTGAACCTG 9439 Query 16725 CCTTCCGG-AGCGTCGCAGAGCAGGACCATTCAGGCCGTGAACGGGGAA---TCAGTCAC 16780 || || || | | || || | | || |||||||| ||||| ||||| | | |||| Sbjct 9440 CCGTCGGGCAAAGCCG-AGGGGCGCACTATTCAGGCGGTGAA--GGGAACGGTGA-TCAC 9495 Query 16781 AGTCACCAC 16789 |||||||| Sbjct 9496 GGTCACCAC 9504 Score = 91.5 bits (100), Expect = 4e-14 Identities = 243/367 (66%), Gaps = 11/367 (3%) Strand=Plus/Plus Query 12762 TTTGGTGGCTTCCCGGGCACGTCTTTGATCAGGAGTTGATATGCGTCA-----GAAAACC 12816 |||||||||||||| ||| | | ||| | ||| | ||| ||| | ||||| | Sbjct 6453 TTTGGTGGCTTCCCCGGCTCTGCATTGTTAAGGCGGTGAGATGGATATACTGCGAAAATC 6512 Query 12817 -ATAG---ATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCTTGAGTGTTGCGGCGT 12872 || | ||||||| ||| | ||||| | | | ||||| || ||| || || || | Sbjct 6513 GATGGTGAATGCGATCATGACTCATGCCGAAACCGAATACCCCAATGAATGCTGTGGTTT 6572 Query 12873 GGTGGCGCAGAAAAGCCGCGTTGAACGTTATTTCCCGTGCCGGAATCTTGCCGCGGCGCC 12932 |||| || || || ||| | ||| ||| ||||| ||| ||| | | || Sbjct 6573 GGTGATTCAAAACAGTCGCAGACAGGAATATATCCGCTGCCGCAATGCCGCCCCCTCACC 6632 Query 12933 GGAGGA-CAATTTTGTCCTTTGCCCCGAAGACTACGCAGCTGCTGAGGACTGGGGAACGG 12991 || |||||||| ||| |||||||| ||||| || || || ||| || Sbjct 6633 CACCGAGCAATTTTG-CCTCCATCCCGAAGATTACGCTAAAGCCGAAGATGCGGGGACTA 6691 Query 12992 TGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCGAGCGAACTGGATAAAG 13051 | | |||||||| ||||||||||| |||||||| || ||||| ||| ||||||||| | Sbjct 6692 TTGTTGCCATCGTCCACAGTCACCCGGACGCCACGACACAGCCCAGCCAACTGGATATCG 6751 Query 13052 CGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTTAC 13111 | ||||| ||| | | | || ||| |||| ||||||||||| ||| | | Sbjct 6752 CACAATGTGACCTGTCACAAATCCCGTGGGTCATTGCTTCATGGCCGGAGGGTGATATTC 6811 Query 13112 GCACCAT 13118 | ||||| Sbjct 6812 GAACCAT 6818 >seq2795 Length=11366 Score = 114 bits (126), Expect = 3e-21 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 34364 AATGGCTAACCTACGCAAAGAAGCGCGCGGCAGAGAATGCCAGGTACGTATTTACGGCGT 34423 |||||| || ||||||||||||||||| || ||||||| ||||| | || ||| | Sbjct 3919 AATGGCAAATCTACGCAAAGAAGCGCGGGGTCGAGAATGTCAGGTCAGAATACCGGGCAT 3860 Query 34424 ATGCAATGGCAACCCTGAAACTACAGTTCTGGCACATTACCGGATGGCTGGAATTTGCGG 34483 || || || ||| ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct 3859 CTGTAACGGTAACAGCGAAACGGTAGTTCTGGCTCATTACCGGATGGCTGGCATTTGTGG 3800 Query 34484 AACTGGAATGAAGCCTGACGACCTGATCGGTGCATGGGCTTG-TAGTGACTGCCACGCGG 34542 | || ||||| || | || ||| | || |||||||| || | ||| || |||| | Sbjct 3799 CATGGGGATGAAACCCAATGATCTGTTTGGGGCATGGGCGTGTTCGTG-TTGTCACGATG 3741 Query 34543 AGATCGACCG 34552 | || ||||| Sbjct 3740 AAATAGACCG 3731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126999302682256