Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq12388 136 3e-27 seq13049 113 4e-20 seq7750 98.7 9e-16 seq8226 96.9 3e-15 seq1186 91.5 1e-13 seq11914 82.4 7e-11 >seq12388 Length=21549 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || || ||||| |||||||| || ||||| ||| || Sbjct 15998 ACCAAGTGAAGAGTCGATTCCTTCTGAATATTGTAATCAGACAGGGTGCGGCCATCTTCA 15939 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| ||||||||||||| ||||||||||| || ||||||||||| Sbjct 15938 AGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATTCCCTCCTTGTCCTGG 15879 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | || | | |||| | | ||||| |||| ||| | |||||| Sbjct 15878 ATTTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGGGTGATCGTTTTA 15819 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || |||||||| |||||| Sbjct 15818 CCAGTCAACGTCTTGACAAAAATTTGCATG 15789 >seq13049 Length=11502 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || ||||| |||||||| || || ||||| |||||| Sbjct 10518 ACCAAGTGCAGAGTCGATTCCTTTTGTATGTTGTAGTCAGACAGGGTGCGGCCATCCTCA 10459 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || |||||||| ||| |||| | ||||| ||||||||||| || ||||| ||||| | Sbjct 10458 AGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCGGGAGGGATTCCCTCTTTGTCCTGA 10399 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | || | | |||| | | ||||| |||| || | |||||| Sbjct 10398 ATCTTGGCTTTGACGTTCTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTA 10339 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || ||||||||| Sbjct 10338 CCAGTGAGGGTCTTCACGAAGATCTGCATG 10309 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||| ||||| || || ||||||||||| | ||||| ||| || || ||| Sbjct 7396 TGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGTTGT 7337 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||| ||||| ||||| || ||||| |||||||| ||||| ||||| Sbjct 7336 TTGCCAGCAAAGATAAGACGTTGCTGGTCTGGAGGAATGCCCTCTTTGTCCTGGATTTTG 7277 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | ||| | | |||| | | ||||| |||| || | |||||| || || Sbjct 7276 GCCTTGACGTTTTCAATGCTGTCTGAGGCTTCGACTTCGAGAGTGATCGTTTTACCAGTG 7217 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 7216 AGGGTCTTCACGAAGATCTGCATG 7193 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||| ||||| || || ||||||||||| | ||||| ||| || ||||| Sbjct 10284 TGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGCTGC 10225 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 |||||||| |||| ||||| ||||| || || || || || |||||||| ||||| Sbjct 10224 TTTCCAGCAAAGATAAGACGTTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATTTTG 10165 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || | || | | || | | ||||| || | ||| | || ||||| || Sbjct 10164 GCTTTGACGTTCTCAATACTATCAGAGGCTTCGACTTCTAAGGTAATTGTCTTGCCAGTA 10105 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||||||| Sbjct 10104 AGGGTCTTGACAAAGATCTGCATG 10081 >seq7750 Length=8304 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||||||||||||||| ||| | ||| || || || ||||| ||||| Sbjct 2740 GTTGACTCTTTTTGAATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCAAGCTGCTTTCCG 2799 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||| || || || || || || |||||||| || || ||| Sbjct 2800 GCGAAGATCAAACGCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTA 2859 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | | || ||||||| ||| | || || || || ||||| Sbjct 2860 ACGTTCTCGATTGTGTCAGAGGCTTCTACCTCGAGGGTAATGGTCTTTCCAGTAAGAGTC 2919 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 2920 TTCACAAAGATTTGCAT 2936 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| ||| | ||| || || || ||||| ||||| Sbjct 797 GTCGACTCCTTCTGAATGTTGTAGTCGGAGAGAGTACGACCGTCTTCAAGCTGCTTTCCG 856 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | || |||||||| ||||| || || || ||||| || || || Sbjct 857 GCGAAGATCAAGCGTTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTG 916 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||||| ||||| | ||| |||||||| | || | ||||| ||||| || || Sbjct 917 ACATTTTCGATTGTGTCGGACGCT-TCGACCTCAAGAGTGATGGTTTTTCCGGTGAGTGT 975 Query 118721 TTTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 976 CTTGACGAAGATCTGCAT 993 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || ||||| || | || ||||| || ||||||||||||||| Sbjct 1497 CCTCCACGGAGACGCAGAACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGAG 1556 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||||| || ||||| ||| |||| | ||||||||||| || || Sbjct 1557 AGTGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGA 1616 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || ||||| || || || || || | |||| ||||| | |||| || || Sbjct 1617 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGATGCT-TCAAC 1675 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || ||||| || || || || || |||||||| Sbjct 1676 TTCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACGAAGATCTGCAT 1723 >seq8226 Length=1064 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 118559 GTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTG 118618 |||||| ||| || ||||| ||||| || |||||||||||| |||| | ||||| Sbjct 605 GTTGTAGTCGGACAAGGTGCGGCCGTCCTCAAGTTGTTTTCCAGCGAAGATCAATCGCTG 664 Query 118619 CTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC 118678 ||| || ||||| || || ||||||||| ||| || || || | ||| | | |||| Sbjct 665 CTGGTCTGGAGGGATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTTTCAATGCTGTC 724 Query 118679 CGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | | ||||| || | ||| | || ||||| || || || || |||||||| ||||| Sbjct 725 TGAGGCTTCGACTTCTAAGGTAATTGTCTTGCCAGTAAGGGTCTTGACAAAAATTTGCAT 784 Query 118739 G 118739 | Sbjct 785 G 785 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || ||||| |||||||| | ||||| ||| || | |||| Sbjct 810 TGGAGGGTTGACTCCTTCTGAATATTGTAATCAGAAAGGGTGCGGCCATCTTCCAACTGT 869 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| ||| |||| | |||||||| || || || |||||||||||||| ||| || Sbjct 870 TTTCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTG 929 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | ||| | | | || | | ||||| |||| || | ||||| || ||| Sbjct 930 GCCTTGACGTTTTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATTGTTTTACCAGTC 989 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 | || || ||||| || |||||| Sbjct 990 AACGTCTTGACAAAGATTTGCATG 1013 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| |||||||| || || ||||| || || ||||| |||||| || || Sbjct 365 GTGGAGTGTTGACTCTTTCTGGATATTGTAGTCCGACAAGGTGCGGCCATCCTCAAGTTG 424 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| |||| ||||| |||||||| || || || ||||||||||| Sbjct 425 TTTGCCAGCAAAGATAAGACGTTGCTGATCAGGCGGGATTCCCTCCTTGTC 475 >seq1186 Length=9182 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| ||||| || ||||| || || |||||||||||||| ||||| Sbjct 3183 TTACCAGCGAAGATAAGACGTTGTTGATCAGGCGGAATGCCCTCCTTGTCCTGGATTTTG 3242 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | ||||| |||||| | |||||| |||| || | || ||||| || Sbjct 3243 GCCTTCACATTTTCGATGGTGTCGGACGCCTCGACTTCGAGCGTAATTGTCTTGCCCGTG 3302 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || |||||||| Sbjct 3303 AGAGTTTTGACGAATATCTGCAT 3325 >seq11914 Length=36757 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| ||||||| |||||||| || ||||| || || |||||||| || || Sbjct 2907 TTACCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTG 2966 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||||| ||||||||||| ||| | || || || || Sbjct 2967 GCCTTCACATTCTCGATGGTGTCCGAAGCCTCGACCTCGAGGGTGATTGTCTTACCCGTT 3026 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || |||||||| Sbjct 3027 AGGGTTTTGACGAATATCTGCAT 3049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433755045286384