Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_002371.2 Length=41724 Score E Sequences producing significant alignments: (Bits) Value seq4764 203 9e-48 >seq4764 Length=15780 Score = 203 bits (224), Expect = 9e-48 Identities = 325/459 (71%), Gaps = 12/459 (3%) Strand=Plus/Plus Query 14013 TCATACAATGAGCAGCGAGAATGGTGTTTTGCATGTGATAGGCGTGTTCAATGGCAAACT 14072 || ||| |||| || || | ||||||| ||||| | || ||||| ||||||| |||| Sbjct 11108 TCGTACCGTGAGTAGTGAAAGTGGTGTTCTGCATATTATTGGCGTATTCAATGACAAAAA 11167 Query 14073 ATCTACTATTGCCCATGAGTGCGCTCACATGGCATTCGATATCTGCTCA-AGGGTCGGTG 14131 || || | || ||||| ||||| || | || ||||||||||| ||| | || |||| Sbjct 11168 CTCGACATTAGCTCATGAATGCGCCCATGTTGCTTTCGATATCTG-TCATCGTGTTGGTG 11226 Query 14132 TTGATGTTGAACCAGGAAGAGCCAACGAGACTTACTGCTACTTAATGAGCAGGCTTGTTG 14191 | |||| |||| || || ||||| | |||||| | || ||||| | |||| Sbjct 11227 TGAATGTGAGTACAGGTGAGGCAAATGAGACATTTTGCTACCTGATAAGCAGATTGGTTG 11286 Query 14192 AGTTCTGCGAGCGACATATCAAAAAGCCGGAGTGACCCGGCTTGATTATTACTT----TT 14247 |||| |||||| | ||||||||||||||||||||||||||| | | |||||| | Sbjct 11287 AGTTTTGCGAGAAGCCTATCAAAAAGCCGGAGTGACCCGGCTT-AGTTTTACTTACCGCT 11345 Query 14248 TGCTGTCTGGAGTTCGCTTATCTAATACCCAGCCATTACCTGGCTTTGTTGTTGGTGGAA 14307 |||| | ||||||| ||||| | | |||| ||||| | || | ||||||||| | Sbjct 11346 TGCTATTGGGAGTTCTTTTATCAAGTTCCCAAGTGTTACCGGATTTAGATGTTGGTGGCA 11405 Query 14308 GCCTTTCGTTGTCCTTGACGGTGGCAAAATTGTCTTTCTTACCGCCTCGCGGGCCAACTT 14367 ||||||| ||| | || ||||| ||||| || | || ||||| || || || |||| Sbjct 11406 ATTTTTCGTTATCCCTTACAGTGGCGAAATTATCAGTTTTGCCGCCACGAGGACCTACTT 11465 Query 14368 CTTGGTATATTCCGCCGTTTTTTCCTGTGTTTTCACCTGGTTTTTTCGCCATGATATACC 14427 | | || || ||||| | || || || ||||| || || || || |||| || | | Sbjct 11466 CACGATAGATACCGCCATCCTTACCAGTATTTTCTCCGGGCTTCTTACCCATAAT-GATC 11524 Query 14428 TCAACA---TACACCCGTTATTGGGCGA-TTAAATATTG 14462 || | | | ||| || ||||| || | |||||||||| Sbjct 11525 TCCATATTGTTCACTCGATATTGAGCCAGTTAAATATTG 11563 Score = 109 bits (120), Expect = 1e-19 Identities = 174/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 40745 TGGCACTCACCGACAAGCAAGAAATGTTCTGTCATGAGTACCTCATCGATTTAAACGCCA 40804 |||||||||||||||| ||||| ||||| |||| ||||||||| | ||||| ||||||| Sbjct 1427 TGGCACTCACCGACAAACAAGAGATGTTTTGTCGCGAGTACCTCGTTGATTTGAACGCCA 1486 Query 40805 CGCAAGCGGCGATTTGGGCGGAG-ATATC--TAAGATTGC-TATCACACTGCCCAAGAAA 40860 | |||||||| ||| | |||| | | | | |||| || ||| | ||| |||| Sbjct 1487 CACAAGCGGCCATTCGTGCGGGGTACAGCGAGAAGACAGCAAATCGTATTGCGTCCGAAA 1546 Query 40861 AAATGTCAAAACCTTACGTCCAGCCAAGGATTATTGTTCTGTAAACTTAAAGCAATGATC 40920 | ||||||||||| | ||||| || | || | || || | || ||||||| Sbjct 1547 ACCTGTCAAAACCTGATATCCAGTCACGAATCGCAGAACTAAAAGCAGAACGCAATGAAG 1606 Query 40921 TGGTTGGTATAAATGTGACACATGTCATGAATCGACTAGTTGAGATAGTCCAGATGGGCG 40980 |||||| | |||| || |||| | || || || ||||| || | ||| |||| | Sbjct 1607 AGGTTGGAGTTAATGCCACCTATGTATTAAAGCGGCTGGTTGAAATTGACCAAATGGATG 1666 Query 40981 TGCTCG 40986 |||||| Sbjct 1667 TGCTCG 1672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133372623862864