Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7750 93.3 3e-14 seq10049 91.5 1e-13 >seq7750 Length=8304 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| |||| || | |||||| || ||||| Sbjct 803 TCCTTCTGAATGTTGTAGTCGGAGAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAAG 862 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||| || || | | || ||||| ||||| ||| | || Sbjct 863 ATCAAGCGTTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTT 922 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || |||||| || | ||||||||||| |||||||| || || || Sbjct 923 TCGATTGTGTCGGACGCTTCGACCTCAAGAGTGATGGTTTTTCCGGTGAGTGTCTTGACG 982 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 983 AAGATCTGCAT 993 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||| | || || || || | ||| ||||| || |||||||||||||| Sbjct 2709 TCCACCGCGCAGACGGAGAACAAGATGAAGAGTTGACTCTTTTTGAATGTTGTAGTCGGA 2768 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| |||| || | |||||| || ||||| || | ||||| ||||| ||| Sbjct 2769 GAGAGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCTGGGGG 2828 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | | | || | || | | ||| || Sbjct 2829 AATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCGATTGTGTCAGAGGCTTCTAC 2888 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||| || || || ||||| ||||||||||| |||||| Sbjct 2889 CTCGAGGGTAATGGTCTTTCCAGTAAGAGTCTTCACAAAGATTTGCATC 2937 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||||| || || || || | || || ||||| ||||||||||| || Sbjct 994 TCCTCCACGCAGCCGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 1053 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || || | |||||| || ||||| || | ||| ||||| || || Sbjct 1054 AAGAGTGCGCCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCGTTGCTGATCTGGAGG 1113 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||||| ||| | || | || | |||| || |||||| Sbjct 1114 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCGGACGCTTCGAC 1173 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| |||||||| || || || ||||||||||| Sbjct 1174 CTCAAGAGTGATGGTTTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 1221 >seq10049 Length=10599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || ||||||||||| || ||| |||| || | |||||| || ||||| Sbjct 9208 TCCTTCTGAATATTGTAGTCGGAAAGAGTACGACCGTCTTCAAGCTGCTTTCCGGCGAAG 9267 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | ||||||||||| | |||| | | |||||||| ||||| ||| | | Sbjct 9268 ATCAATCGCTGCTGGTCTGGCGGG-ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 9326 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || ||| | | |||||| || | ||||||||||| || ||||| || ||||| Sbjct 9327 CTCAATGCTATCAGAGGCTTCGACTTCGAGAGTGATGGTTTTACCAGTGAGGGTCTTCAC 9386 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 9387 GAAGATCTGCAT 9398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323015883605120