Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6327 86.0 1e-11 >seq6327 Length=14581 Score = 86.0 bits (94), Expect = 1e-11 Identities = 172/255 (67%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 248832 TTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAAT 248891 ||||||||| ||||| || ||| | | ||||| ||||| || | || || || Sbjct 4127 TTTCAAAACTTTGGAGCGGTCATATTTGTTAAAAATGGATGGACAGGTTGTCGAGCGTCC 4186 Query 248892 TCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCT 248951 ||| || || | ||||| || ||||| || ||||||||||| || || || || | Sbjct 4187 TCAACATTTGCTTATGCGTGTCGCTGTTGGAATTCACAAGGAAGATATCGATGCCGCTAT 4246 Query 248952 CGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 ||| || |||| ||| || |||||| | || ||||| | || || || ||||| Sbjct 4247 CGAAACCTACAATTTGATGTCCGAGCGCTGGTTCACTCATGCTTCTCCTACACTTTTCAA 4306 Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071 || || || ||| || ||||||| ||||| || || | ||||| ||||| || Sbjct 4307 TGCAGGAACTTGCAAACCACAAATGAGCTCTTGCTTCCTCCTGACGATGCATGACGATTC 4366 Query 249072 TGTCGACGGCATTTA 249086 | || || ||||| Sbjct 4367 AATTGATGGGATTTA 4381 Score = 84.2 bits (92), Expect = 5e-11 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 248832 TTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAAT 248891 ||||||||| ||||| || ||| | | ||||| ||||| | | || || || Sbjct 5507 TTTCAAAACTTTGGAGCGGTCATATTTGTTAAAAATAGATGGACGGGTTGTTGAGCGTCC 5566 Query 248892 TCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCT 248951 ||| || || | ||||| || || || || ||||||||||| || || ||| || | Sbjct 5567 TCAACATTTGCTTATGCGTGTCGCCGTTGGAATTCACAAGGAAGATATCGAGGCCGCTAT 5626 Query 248952 CGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 ||| || |||| ||| || |||||| | || ||||| | || || || ||||| Sbjct 5627 CGAAACCTACAATTTGATGTCCGATCGCTGGTTCACTCATGCTTCTCCCACACTTTTCAA 5686 Query 249012 CGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG-CCATGCAAGACGAC 249069 || || || || ||| | || ||||||| ||||||| ||||| | ||||| ||||| Sbjct 5687 TGCAGGAACTTGTAAACCA-CAAATGAGCTCTTGCTTTC-TCTTGACGATGCATGACGAT 5744 Query 249070 TC 249071 || Sbjct 5745 TC 5746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073570326228736